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The map label for this gene is 15921529

Identifier: 15921529

GI number: 15921529

Start: 1265411

End: 1266640

Strand: Direct

Name: 15921529

Synonym: ST1265

Alternate gene names: NA

Gene position: 1265411-1266640 (Clockwise)

Preceding gene: 15921526

Following gene: 15921530

Centisome position: 46.96

GC content: 33.98

Gene sequence:

>1230_bases
ATGAAAGTATATATCGTGGAACATGCGATAGGGTCGTTTGCATATGATGAGCAAGGTAAGCTTATAGACTTTGTATTGAG
TAGTAAGGACTTAGGAAAAGTTGTAGATTCTTTACTAGATAATGAAAAAGGTATTCCATTGCCAACTACCATAGAATTAA
TTCAGAAGATAAAACCAGAAGAAGTAGTAGTGGAGAATGAAGCAGAAATACCAAATTTGCAACAGTTAGGTGTTAAAGCT
TCTTATGAAATACATAATCTTGGAAGTAAAATATTTAGAGAATCATTACCCAAGATAGCAATAGAAACAAAGTTTGCATC
CTCAGAGAACGATTTATACTCATTTTTATATGAAGTTTCTTTTGAATATACTAGAAGAAAATTAAGAACTGCAGCCAGTA
AAAGAGACTTACTAGCAATCCAGGCTATTAGGGCAATTGATGATATTGATAAAACTATAAATCTATTTTCGGAAAGATTA
AGAGAATGGTATAGTATTCATTTCCCAGAACTTAATAAGCTTGTAGAAGATCATGAACTTTACGCTTCTATTGTTTCAAA
ATTTGGACATAGGGATGAAATAACAAATACGGGGTTAGATGAAATAGGAGTGAATAAAGATCTGAGCACTAAAATTTTAG
ATGCATCGAAAAAGAGTATTGGAGCTGATATTACTGATGTAGATATAAGATCAATTAAGATGCTAAGCGATACCATATTA
GAGCTTTTCAGAATAAGATCAGAACTTACAGATTATGTTGAATCAGTTATGAAAGAAGTAGCTCCTAATGTTACTGCTTT
AGTAGGACCAACACTAGGTGCGCGATTATTAAGTTTAGCTGGTAGCCTAGAAGATTTAGCTAAAATGCCTGCTAGTACAA
TTCAAGTCTTAGGTGCAGAGAAAGCTCTGTTTAGAGCTTTAAGAAAAGGAGGCAAACCGCCAAAACACGGTGTTATATTT
CAATATCCAGCAATTCATACTTCTCCAAGGTGGCAAAGAGGTAAAATTGCAAGAGCATTAGCTGCTAAATTAGCAATAGC
TGCCAGAATAGACGCTTTTAGTGGCAGATTTATAGGTGATAAATTGAATGAGGAGTTAAAGAAAAGGATTGAGGAGATTA
AGACAAAATACGCTCAACCTCCACCAAGGAAGCCACAAGAACAAAAGAGAAAAGAAGAAGAAAGAAAAGGTAAAAAAGGA
GGAAGAGAAAAAAGAAAAGGTAGGAGATGA

Upstream 100 bases:

>100_bases
CTTTTCCAGCTTTTGTGAGCGAACCGTGGGATGGCATACTAAATTATATGTGATGAAGAAAAATTTAAACTTAAATGCTA
ATTAGTTGTTTTGAGTACTG

Downstream 100 bases:

>100_bases
AATTTATGTCAGAATTAGTTAAGATTTCAAAAACACAGTTTGAAAATGTGTTTCAATGTGAATTTAATGATGGCACAGTA
AGGCTTTGTACTAAAAACTT

Product: C/D box methylation guide ribonucleoprotein complex aNOP56 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKVYIVEHAIGSFAYDEQGKLIDFVLSSKDLGKVVDSLLDNEKGIPLPTTIELIQKIKPEEVVVENEAEIPNLQQLGVKA
SYEIHNLGSKIFRESLPKIAIETKFASSENDLYSFLYEVSFEYTRRKLRTAASKRDLLAIQAIRAIDDIDKTINLFSERL
REWYSIHFPELNKLVEDHELYASIVSKFGHRDEITNTGLDEIGVNKDLSTKILDASKKSIGADITDVDIRSIKMLSDTIL
ELFRIRSELTDYVESVMKEVAPNVTALVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAEKALFRALRKGGKPPKHGVIF
QYPAIHTSPRWQRGKIARALAAKLAIAARIDAFSGRFIGDKLNEELKKRIEEIKTKYAQPPPRKPQEQKRKEEERKGKKG
GREKRKGRR

Sequences:

>Translated_409_residues
MKVYIVEHAIGSFAYDEQGKLIDFVLSSKDLGKVVDSLLDNEKGIPLPTTIELIQKIKPEEVVVENEAEIPNLQQLGVKA
SYEIHNLGSKIFRESLPKIAIETKFASSENDLYSFLYEVSFEYTRRKLRTAASKRDLLAIQAIRAIDDIDKTINLFSERL
REWYSIHFPELNKLVEDHELYASIVSKFGHRDEITNTGLDEIGVNKDLSTKILDASKKSIGADITDVDIRSIKMLSDTIL
ELFRIRSELTDYVESVMKEVAPNVTALVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAEKALFRALRKGGKPPKHGVIF
QYPAIHTSPRWQRGKIARALAAKLAIAARIDAFSGRFIGDKLNEELKKRIEEIKTKYAQPPPRKPQEQKRKEEERKGKKG
GREKRKGRR
>Mature_409_residues
MKVYIVEHAIGSFAYDEQGKLIDFVLSSKDLGKVVDSLLDNEKGIPLPTTIELIQKIKPEEVVVENEAEIPNLQQLGVKA
SYEIHNLGSKIFRESLPKIAIETKFASSENDLYSFLYEVSFEYTRRKLRTAASKRDLLAIQAIRAIDDIDKTINLFSERL
REWYSIHFPELNKLVEDHELYASIVSKFGHRDEITNTGLDEIGVNKDLSTKILDASKKSIGADITDVDIRSIKMLSDTIL
ELFRIRSELTDYVESVMKEVAPNVTALVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAEKALFRALRKGGKPPKHGVIF
QYPAIHTSPRWQRGKIARALAAKLAIAARIDAFSGRFIGDKLNEELKKRIEEIKTKYAQPPPRKPQEQKRKEEERKGKKG
GREKRKGRR

Specific function: Unknown

COG id: COG1498

COG function: function code J; Protein implicated in ribosomal biogenesis, Nop56p homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Nop domain [H]

Homologues:

Organism=Homo sapiens, GI32483374, Length=254, Percent_Identity=42.5196850393701, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI7706254, Length=244, Percent_Identity=39.344262295082, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI221136939, Length=239, Percent_Identity=31.7991631799163, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17509449, Length=284, Percent_Identity=40.4929577464789, Blast_Score=218, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI17562296, Length=258, Percent_Identity=38.3720930232558, Blast_Score=195, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI17510923, Length=263, Percent_Identity=32.6996197718631, Blast_Score=108, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6324886, Length=367, Percent_Identity=35.6948228882834, Blast_Score=206, Evalue=5e-54,
Organism=Saccharomyces cerevisiae, GI6323226, Length=260, Percent_Identity=38.0769230769231, Blast_Score=190, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6321528, Length=276, Percent_Identity=27.536231884058, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28572126, Length=283, Percent_Identity=38.86925795053, Blast_Score=197, Evalue=9e-51,
Organism=Drosophila melanogaster, GI17137636, Length=230, Percent_Identity=41.304347826087, Blast_Score=194, Evalue=9e-50,
Organism=Drosophila melanogaster, GI21357435, Length=275, Percent_Identity=30.5454545454545, Blast_Score=113, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012976
- InterPro:   IPR002687 [H]

Pfam domain/function: PF01798 Nop; PF08060 NOSIC [H]

EC number: NA

Molecular weight: Translated: 46121; Mature: 46121

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYIVEHAIGSFAYDEQGKLIDFVLSSKDLGKVVDSLLDNEKGIPLPTTIELIQKIKPE
CEEEEEEHHHCCCCCCCCCCEEHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
EVVVENEAEIPNLQQLGVKASYEIHNLGSKIFRESLPKIAIETKFASSENDLYSFLYEVS
CEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
FEYTRRKLRTAASKRDLLAIQAIRAIDDIDKTINLFSERLREWYSIHFPELNKLVEDHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YASIVSKFGHRDEITNTGLDEIGVNKDLSTKILDASKKSIGADITDVDIRSIKMLSDTIL
HHHHHHHCCCCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ELFRIRSELTDYVESVMKEVAPNVTALVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAE
HHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHH
KALFRALRKGGKPPKHGVIFQYPAIHTSPRWQRGKIARALAAKLAIAARIDAFSGRFIGD
HHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
KLNEELKKRIEEIKTKYAQPPPRKPQEQKRKEEERKGKKGGREKRKGRR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKVYIVEHAIGSFAYDEQGKLIDFVLSSKDLGKVVDSLLDNEKGIPLPTTIELIQKIKPE
CEEEEEEHHHCCCCCCCCCCEEHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
EVVVENEAEIPNLQQLGVKASYEIHNLGSKIFRESLPKIAIETKFASSENDLYSFLYEVS
CEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
FEYTRRKLRTAASKRDLLAIQAIRAIDDIDKTINLFSERLREWYSIHFPELNKLVEDHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YASIVSKFGHRDEITNTGLDEIGVNKDLSTKILDASKKSIGADITDVDIRSIKMLSDTIL
HHHHHHHCCCCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ELFRIRSELTDYVESVMKEVAPNVTALVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAE
HHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHH
KALFRALRKGGKPPKHGVIFQYPAIHTSPRWQRGKIARALAAKLAIAARIDAFSGRFIGD
HHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
KLNEELKKRIEEIKTKYAQPPPRKPQEQKRKEEERKGKKGGREKRKGRR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]