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The map label for this gene is rpoH [H]

Identifier: 15920467

GI number: 15920467

Start: 295283

End: 295582

Strand: Reverse

Name: rpoH [H]

Synonym: STS038

Alternate gene names: 15920467

Gene position: 295582-295283 (Counterclockwise)

Preceding gene: 15920468

Following gene: 15920466

Centisome position: 10.97

GC content: 34.33

Gene sequence:

>300_bases
GTGGTCGAAACTACTTACATATTACGACTTAGTTTGGTGAATATAATGCGTTCTTCATCAAAAATTAAAATAGATCCTAG
TCAGCATGAGCTTGTTCCTAAGCATGAGGTCCTAAGCATAGAAGAAGCTTATAAAATTCTTAAGGAATTAGGAATAAAAC
CAGAGCAACTTCCTTGGATTAGAGCATCAGATCCTATAGCTAAATTAGTTGGTGCAAAACCTGGAGATATAATTAAAATT
ACCAGAAAAAGCTCTTTGTCTGGAGAAGTAGTTGTATATAGATACGTTATAAGTGGGTGA

Upstream 100 bases:

>100_bases
TGCAAGAGTTTCATTATCATATGACGAAATTTATTCTTCCGCAAGAGAGATTATAAATTCTGCAAGAAAACTCCTTTCTT
CATTAACATAATTTTTTTAA

Downstream 100 bases:

>100_bases
TATAAGTGAGTCTTACAGTTAATGAGAGATGGGAAATTGTTAAATCATTCTTTAAACTAAGGGGTTTAGTGAGACAACAT
TTAGATTCTTTCAATGATTT

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MVETTYILRLSLVNIMRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKI
TRKSSLSGEVVVYRYVISG

Sequences:

>Translated_99_residues
MVETTYILRLSLVNIMRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKI
TRKSSLSGEVVVYRYVISG
>Mature_99_residues
MVETTYILRLSLVNIMRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKI
TRKSSLSGEVVVYRYVISG

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI14589951, Length=73, Percent_Identity=41.0958904109589, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17507947, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6319630, Length=71, Percent_Identity=45.0704225352113, Blast_Score=65, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19922004, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- ProDom:   PD005155 [H]

Pfam domain/function: PF01191 RNA_pol_Rpb5_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11113; Mature: 11113

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVETTYILRLSLVNIMRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWI
CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCEE
RASDPIAKLVGAKPGDIIKITRKSSLSGEVVVYRYVISG
CCCCHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECC
>Mature Secondary Structure
MVETTYILRLSLVNIMRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWI
CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCEE
RASDPIAKLVGAKPGDIIKITRKSSLSGEVVVYRYVISG
CCCCHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]