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The map label for this gene is rpl30e

Identifier: 15920463

GI number: 15920463

Start: 287752

End: 288072

Strand: Reverse

Name: rpl30e

Synonym: ST0274

Alternate gene names: 15920463

Gene position: 288072-287752 (Counterclockwise)

Preceding gene: 15920464

Following gene: 161751102

Centisome position: 10.69

GC content: 33.02

Gene sequence:

>321_bases
ATGGCAGAAGTAACAGGATTTGAAAGCGAGCTAAAAACTTTATTAAGAACAGGAAAAGTAGTTTTTGGGAGCAAAAAAAC
AATAAAAATGGTGAAGACAGGGAAAGTAAAAATGGTAATAATAGCTTCTACCTTGAGGCAAGATCTTAAAGATGATATTC
TAGCTTATGCAAAGATATCTAATATTCCAGTTTATCAGTATAATGGTAGTGCATATGAATTAGGAACACTTTGTGGAAAA
CCATTTATGATATCCACTATTGGTGTTATAGATCCTGGTGAATCCAGATTACTAGAAGAAATAAAGGAGGGGGCTCAATA
A

Upstream 100 bases:

>100_bases
AATTTAAAGGAGTAGTAGAAAATATTATAATCGGTCAACCAATTAGATTGGGCACGGGTATAGTTGAGTTGACTATGAGG
CTGAATGTGAGGTGAAGTAA

Downstream 100 bases:

>100_bases
TTGCCTGAGATTAAGCTTACTTCAGAGGAATTAAGGTATATGTCACTTTTTCAAGACGTAACGCGTGTAACTGCAAGGGA
TTGTATTGTAGATGAAGAAA

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MAEVTGFESELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGK
PFMISTIGVIDPGESRLLEEIKEGAQ

Sequences:

>Translated_106_residues
MAEVTGFESELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGK
PFMISTIGVIDPGESRLLEEIKEGAQ
>Mature_105_residues
AEVTGFESELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGKP
FMISTIGVIDPGESRLLEEIKEGAQ

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=97, Percent_Identity=38.1443298969072, Blast_Score=82, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=38.7096774193548, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321408, Length=101, Percent_Identity=34.6534653465347, Blast_Score=60, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17864264, Length=95, Percent_Identity=35.7894736842105, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24585096, Length=95, Percent_Identity=35.7894736842105, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_SULTO (P58376)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376132.1
- ProteinModelPortal:   P58376
- SMR:   P58376
- GeneID:   1458175
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0274
- NMPDR:   fig|273063.1.peg.300
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- ProtClustDB:   PRK01018
- BioCyc:   STOK273063:ST0274-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 11616; Mature: 11485

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVTGFESELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKIS
CCCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHC
NIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEIKEGAQ
CCEEEEECCCEEEEHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AEVTGFESELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKIS
CCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHC
NIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEIKEGAQ
CCEEEEECCCEEEEHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479