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The map label for this gene is vdcC [H]

Identifier: 15920229

GI number: 15920229

Start: 68421

End: 69857

Strand: Reverse

Name: vdcC [H]

Synonym: ST0052

Alternate gene names: 15920229

Gene position: 69857-68421 (Counterclockwise)

Preceding gene: 15920230

Following gene: 15920227

Centisome position: 2.59

GC content: 36.88

Gene sequence:

>1437_bases
ATGGAAATTAGAAAGTTTATTGAAGAGGTTAGAAGATTAAACCTTTTGAGGGAGATTAAGGGAGCAAACTGGAATTTAGA
AATTGGAGCAATTACTGACCTTAACGCAAAGAAAAACAAATACACTTTACTATTTGACGAGATAGTTGATTATCCGAAAG
GATTTAGAGTTCTTACTGGAACACTTTTAGACTCTAGGAGGGTTAGTTTAGCCTTAGGTTTTTCCCCTAATTTAAATAAC
CTGGAACTAGTCTTAAAGTTGAGGGAAAGATTAAATTATGCTTATAAAGAATACAGAAGCTATGAGCCATTGGAGGTTTC
TGATGCACCTTTTTTAGAAAACGTTGACAAGGACGATAGTGTGAATCTCTTGAAATTTCCCGCACCTAAATGGCATGAAA
TGGATGGTGGGAGATACATAGGTACAGCAGATGCAGTAATAACAAGTGACTCGGACTCTAATTGGGTTAATGTAGGAACT
TATAGGGTAATGCTAGTTGACAAAAATAGATTGGCAATATTTATAGAGGCCAGTCACCACGGTAGGTTACATATTGAAAA
ATATTTGAGTAAAGGTAAGAAAGCTCCAATAGCAATATCCTTTGGCCCACCTTTGTCTCTTTTAATATTTGCTGGTATGG
AAGTACCTTTAGGAGTTTCTGAATACAATTTTGCAGGAGCAGTAATAGGAGAAAGATTCAGAGTGTTTAGAGGTGAGGTT
ACTGGTCTCCCTATTCCCGCTGACAGTGAAATAGCTGTAGAGGGATACATAACTGGTGAATTAACTGATGAGGGACCTTT
TGGGGAGTTTATGGGATATTATGCTGGAGGGAGAATGAAAAGTCCAGTAATTGATGTTAAGAGGGTTTATTATAGACAAG
ATCCAATATTATTAGGTACTGCACCTAGTATACCTCCATATGATTATTCTTATTTTAGATGTCCCATAAGATCTGCTATG
ATTTGGGATTTCCTAGAAAGAGCTGGAGTACCTAATATAAAAGGAGTTTGGGCTCATGAAGTTGGTTTTTCGAGAGCATT
TATTGTAATATCAATAAAGCAATCTTTTGCCGGTCACGCAACTATGGTAGGGCATTTAGTTAGCACAAGTCCTTTAGGTG
CTTATGGCGGGAGATATGTAATTGTAGTTGACGATGACATTGATCCTTCAGACTTAAACCAGGTAGTATGGGCTATGTGT
ACTAGATCTGATCCAGCAACTTCGATAGACGTTATTAAAAACGTTACCAGTACTCCGTTAGATCCAATGGCTGAAAGGAA
AGAAAACTTGAAGGAATACTCCTCATCTAGGGCAATAATCTACGCAGTAAAGCCATTTAGTAGGCTAATTAGAAATGAAT
TTCCAATAGAAGTTAAACCTAGTGAAGAACTAAGTAAAAAAGTAATGGAGAAGTGGAGTGAAATTTTCTCTAATTGA

Upstream 100 bases:

>100_bases
AATTATCGTTAGAAGAAGCTAATGAAGCTTTAAATAATTTAGAATCTAATAAAGTAACGGGAAGGCAAGTATTAATACCT
TAAATATGGTAGAGTAGAAT

Downstream 100 bases:

>100_bases
AGAAATATTCTAAAAACCTTTTTCTATTTATTATGGTCTATCTCTTAAAATAAGCTTAATGATAATTGACGCCAAAAGAG
GATTTAATCTATGCTTATTC

Product: hypothetical protein

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MEIRKFIEEVRRLNLLREIKGANWNLEIGAITDLNAKKNKYTLLFDEIVDYPKGFRVLTGTLLDSRRVSLALGFSPNLNN
LELVLKLRERLNYAYKEYRSYEPLEVSDAPFLENVDKDDSVNLLKFPAPKWHEMDGGRYIGTADAVITSDSDSNWVNVGT
YRVMLVDKNRLAIFIEASHHGRLHIEKYLSKGKKAPIAISFGPPLSLLIFAGMEVPLGVSEYNFAGAVIGERFRVFRGEV
TGLPIPADSEIAVEGYITGELTDEGPFGEFMGYYAGGRMKSPVIDVKRVYYRQDPILLGTAPSIPPYDYSYFRCPIRSAM
IWDFLERAGVPNIKGVWAHEVGFSRAFIVISIKQSFAGHATMVGHLVSTSPLGAYGGRYVIVVDDDIDPSDLNQVVWAMC
TRSDPATSIDVIKNVTSTPLDPMAERKENLKEYSSSRAIIYAVKPFSRLIRNEFPIEVKPSEELSKKVMEKWSEIFSN

Sequences:

>Translated_478_residues
MEIRKFIEEVRRLNLLREIKGANWNLEIGAITDLNAKKNKYTLLFDEIVDYPKGFRVLTGTLLDSRRVSLALGFSPNLNN
LELVLKLRERLNYAYKEYRSYEPLEVSDAPFLENVDKDDSVNLLKFPAPKWHEMDGGRYIGTADAVITSDSDSNWVNVGT
YRVMLVDKNRLAIFIEASHHGRLHIEKYLSKGKKAPIAISFGPPLSLLIFAGMEVPLGVSEYNFAGAVIGERFRVFRGEV
TGLPIPADSEIAVEGYITGELTDEGPFGEFMGYYAGGRMKSPVIDVKRVYYRQDPILLGTAPSIPPYDYSYFRCPIRSAM
IWDFLERAGVPNIKGVWAHEVGFSRAFIVISIKQSFAGHATMVGHLVSTSPLGAYGGRYVIVVDDDIDPSDLNQVVWAMC
TRSDPATSIDVIKNVTSTPLDPMAERKENLKEYSSSRAIIYAVKPFSRLIRNEFPIEVKPSEELSKKVMEKWSEIFSN
>Mature_478_residues
MEIRKFIEEVRRLNLLREIKGANWNLEIGAITDLNAKKNKYTLLFDEIVDYPKGFRVLTGTLLDSRRVSLALGFSPNLNN
LELVLKLRERLNYAYKEYRSYEPLEVSDAPFLENVDKDDSVNLLKFPAPKWHEMDGGRYIGTADAVITSDSDSNWVNVGT
YRVMLVDKNRLAIFIEASHHGRLHIEKYLSKGKKAPIAISFGPPLSLLIFAGMEVPLGVSEYNFAGAVIGERFRVFRGEV
TGLPIPADSEIAVEGYITGELTDEGPFGEFMGYYAGGRMKSPVIDVKRVYYRQDPILLGTAPSIPPYDYSYFRCPIRSAM
IWDFLERAGVPNIKGVWAHEVGFSRAFIVISIKQSFAGHATMVGHLVSTSPLGAYGGRYVIVVDDDIDPSDLNQVVWAMC
TRSDPATSIDVIKNVTSTPLDPMAERKENLKEYSSSRAIIYAVKPFSRLIRNEFPIEVKPSEELSKKVMEKWSEIFSN

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=442, Percent_Identity=27.6018099547511, Blast_Score=137, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6320748, Length=471, Percent_Identity=26.7515923566879, Blast_Score=148, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 53821; Mature: 53821

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRKFIEEVRRLNLLREIKGANWNLEIGAITDLNAKKNKYTLLFDEIVDYPKGFRVLTG
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEHHHHCCCCCCEEEEE
TLLDSRRVSLALGFSPNLNNLELVLKLRERLNYAYKEYRSYEPLEVSDAPFLENVDKDDS
EHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
VNLLKFPAPKWHEMDGGRYIGTADAVITSDSDSNWVNVGTYRVMLVDKNRLAIFIEASHH
CCEEECCCCCCCCCCCCEEEECCCEEEECCCCCCEEEECEEEEEEEECCCEEEEEEECCC
GRLHIEKYLSKGKKAPIAISFGPPLSLLIFAGMEVPLGVSEYNFAGAVIGERFRVFRGEV
CCEEHHHHHHCCCCCCEEEECCCCHHEHEEECCCCCCCCCCCCCHHHHHHHHHHHEECCC
TGLPIPADSEIAVEGYITGELTDEGPFGEFMGYYAGGRMKSPVIDVKRVYYRQDPILLGT
CCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHEECCCEEEEC
APSIPPYDYSYFRCPIRSAMIWDFLERAGVPNIKGVWAHEVGFSRAFIVISIKQSFAGHA
CCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCH
TMVGHLVSTSPLGAYGGRYVIVVDDDIDPSDLNQVVWAMCTRSDPATSIDVIKNVTSTPL
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
DPMAERKENLKEYSSSRAIIYAVKPFSRLIRNEFPIEVKPSEELSKKVMEKWSEIFSN
CHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIRKFIEEVRRLNLLREIKGANWNLEIGAITDLNAKKNKYTLLFDEIVDYPKGFRVLTG
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEHHHHCCCCCCEEEEE
TLLDSRRVSLALGFSPNLNNLELVLKLRERLNYAYKEYRSYEPLEVSDAPFLENVDKDDS
EHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
VNLLKFPAPKWHEMDGGRYIGTADAVITSDSDSNWVNVGTYRVMLVDKNRLAIFIEASHH
CCEEECCCCCCCCCCCCEEEECCCEEEECCCCCCEEEECEEEEEEEECCCEEEEEEECCC
GRLHIEKYLSKGKKAPIAISFGPPLSLLIFAGMEVPLGVSEYNFAGAVIGERFRVFRGEV
CCEEHHHHHHCCCCCCEEEECCCCHHEHEEECCCCCCCCCCCCCHHHHHHHHHHHEECCC
TGLPIPADSEIAVEGYITGELTDEGPFGEFMGYYAGGRMKSPVIDVKRVYYRQDPILLGT
CCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHEECCCEEEEC
APSIPPYDYSYFRCPIRSAMIWDFLERAGVPNIKGVWAHEVGFSRAFIVISIKQSFAGHA
CCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCH
TMVGHLVSTSPLGAYGGRYVIVVDDDIDPSDLNQVVWAMCTRSDPATSIDVIKNVTSTPL
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
DPMAERKENLKEYSSSRAIIYAVKPFSRLIRNEFPIEVKPSEELSKKVMEKWSEIFSN
CHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA