Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 41223335
Identifier: 41223335
GI number: 41223335
Start: 119313
End: 119915
Strand: Direct
Name: 41223335
Synonym: Atu6099
Alternate gene names: NA
Gene position: 119313-119915 (Clockwise)
Preceding gene: 159161972
Following gene: 16119915
Centisome position: 55.69
GC content: 62.52
Gene sequence:
>603_bases ATGACCGTCTCTCCAATACGTAAAGTCTTTGAAGGCATTGCCGACCGCCGGCAGATGTACCGCTTGTTCGACCGCCACGC GCAACGCCTGAACCGCTGGGAGAGCGACGACAGCGCGCTCTATCGAGGCGAATGGTTCGAAGTCGCCCAGGCGCAGCACG ATCACATGTTCGAGATCCTGCCGCCGCTGTTCATGCGGGGCGATATGTTCGCCATGCGCGAGTTCCTCACCGACAGCATC ACCAGCATCTTTTTCACGCTGACGATCGACGACCGGATGCGGTATTTCCACGGCTACTGCGACTTGTCCGAGAAGGGCTC GCCGGAGCGGATGCGTGCCGCAATCGTAGAGCGCGAAACCCGGCCTGTTCGGGCGATGACGCGCGAGGAACGCCTGGACC ACATCTGGTCGAGCACCCATGATGACTATCGCGGCTATGCCGGCGAGCGCTGGCCGGAACGCAACCACGGCAAGCGGACC GTGCTGTTCTACGGCGGACGCCAGGGCACCGTCCTGGAGCTGCTCGACGACCTCACGGATGCGCAGATCGCATCAAAGCT GCCGGTGCATCTGCGCTACCTCCCTGACGCGATAGCGGCGTAA
Upstream 100 bases:
>100_bases GAGGCGGCGCCAAGGAGGGGTCAGGAAGGGCTGAAGAGGATGGCGACATCGCGAGGATGAGCCGCGTGTCCTTCCCGACG AGGCTGAAAGGAGCCCGCCG
Downstream 100 bases:
>100_bases GGGAGGCGGCGATGTTCACCTTTTCCGTGACGGACATCCACGTCGTCATGATGCGCGGACGGCTGGACGCCTACCTCAAC GGCGGTTTCCGCAATCCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTVSPIRKVFEGIADRRQMYRLFDRHAQRLNRWESDDSALYRGEWFEVAQAQHDHMFEILPPLFMRGDMFAMREFLTDSI TSIFFTLTIDDRMRYFHGYCDLSEKGSPERMRAAIVERETRPVRAMTREERLDHIWSSTHDDYRGYAGERWPERNHGKRT VLFYGGRQGTVLELLDDLTDAQIASKLPVHLRYLPDAIAA
Sequences:
>Translated_200_residues MTVSPIRKVFEGIADRRQMYRLFDRHAQRLNRWESDDSALYRGEWFEVAQAQHDHMFEILPPLFMRGDMFAMREFLTDSI TSIFFTLTIDDRMRYFHGYCDLSEKGSPERMRAAIVERETRPVRAMTREERLDHIWSSTHDDYRGYAGERWPERNHGKRT VLFYGGRQGTVLELLDDLTDAQIASKLPVHLRYLPDAIAA >Mature_199_residues TVSPIRKVFEGIADRRQMYRLFDRHAQRLNRWESDDSALYRGEWFEVAQAQHDHMFEILPPLFMRGDMFAMREFLTDSIT SIFFTLTIDDRMRYFHGYCDLSEKGSPERMRAAIVERETRPVRAMTREERLDHIWSSTHDDYRGYAGERWPERNHGKRTV LFYGGRQGTVLELLDDLTDAQIASKLPVHLRYLPDAIAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23678; Mature: 23547
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSPIRKVFEGIADRRQMYRLFDRHAQRLNRWESDDSALYRGEWFEVAQAQHDHMFEIL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH PPLFMRGDMFAMREFLTDSITSIFFTLTIDDRMRYFHGYCDLSEKGSPERMRAAIVERET HHHHHCCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC RPVRAMTREERLDHIWSSTHDDYRGYAGERWPERNHGKRTVLFYGGRQGTVLELLDDLTD CHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH AQIASKLPVHLRYLPDAIAA HHHHHCCCHHHHCCCHHHCC >Mature Secondary Structure TVSPIRKVFEGIADRRQMYRLFDRHAQRLNRWESDDSALYRGEWFEVAQAQHDHMFEIL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH PPLFMRGDMFAMREFLTDSITSIFFTLTIDDRMRYFHGYCDLSEKGSPERMRAAIVERET HHHHHCCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC RPVRAMTREERLDHIWSSTHDDYRGYAGERWPERNHGKRTVLFYGGRQGTVLELLDDLTD CHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH AQIASKLPVHLRYLPDAIAA HHHHHCCCHHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA