Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 159161972
Identifier: 159161972
GI number: 159161972
Start: 116838
End: 117917
Strand: Direct
Name: 159161972
Synonym: Atu6096
Alternate gene names: NA
Gene position: 116838-117917 (Clockwise)
Preceding gene: 16119908
Following gene: 41223335
Centisome position: 54.54
GC content: 64.54
Gene sequence:
>1080_bases CTGCTGGCACCCGGGCGGTGGCCCAAGGTGCAGATTGTCATCTTGCCAGCCGCGCCCTTGCCTCCTTTGCTCTTCGCGAT GTCCGGAGCGGGCCCGCAAGGTGCGGGGAAAAGAAACAGAAGGAAAGGCGGACGCAAGGGTGCGTCGGGAATTCAAATGG AAAAGAAGGAACTGGAAGAACTGCGGGACCGCGTGCAATGCGCTGCGGTGCTGGAGCAGGCAGGGTTTGCCATCGACCTG AAGGAGAGCACCCGCAGGGCGGTCAAATTCCGCGGCGGCGGGGCCATAATCATCGTGATTCACGAGGGCAGGGGCTGGTT CGATCCGCTGTCCGATGCCAAGGGTGACGTGTTCGGTCTTGTCGAGCATCTCGACCGAGTGCCCTTTGTCGAAGCCCTCG ACCATGTCGCATCGCTGGTCGACTTCGTCCCGAAGGAGCCGGTCTGGACCCACGCTGCGCGCGAGATCGATCTGCCGGCC GGAGTTTCAGAACGATGGACGAAGCGCCGCAAGCCGTGGCCGGGTTCGATGACCTGGCGCTATCTCCGCGACGACCGCTG CGTTCCGGAAGCGACCATCCGCGCAGCGATCCGGCATGATCTCGTGCGCGAAGGTCCGCGCGGCAGCATGTGGGCCGCGC ACCGTGACAGCGAGGGCGCCGTCACCGGCTGGGAGGAACGCGGGCCGGAATGGCGCGGCTTTTCGACGGGAGGCGCGAAG GTGTTGTTCAGGTTCGGCGCGATCCATGCGCCGCGCCTTTGCGTGACGGAGGCTGCCATCGACGCCATGAGCCTTGCCGC GCTGGAGAGTAATCGGCGCGATAGCCTCTATGTCAGTACCGGCGGCGGCTGGGCCCCTGCCACCGATGCGGCGATCCGTT TATTGGCGGCGCGTAAGGGTATTTTGGTGGTCGCCGCCACGGATAATAACGCGCAGGGCGATATCTACGCTGATCGGTTG GAAGCAGTTGCCCGGGACGCTAACTGCGGCTTTGAGCGCCATCGTCCCCGCCACGAGGACTGGAACGAGGACCTTTGCAC TCAGCTGCGCGCGAATTCGAGGAGAGGCGCGATGTCGTGA
Upstream 100 bases:
>100_bases GGAGATCGTGCATGAATACGTTCCGGGCGGGTCTCATTGAGACCCTTCTCGCCTTTTTGGTGCCGCTTGCGAGCCGCAGG CGGCAAGGGAAGCTTCGCCG
Downstream 100 bases:
>100_bases TTATCCGCGGCCTGCAGTGCCGCGACGTATCGCGTGCGCAGATCTCCCACGTCGCCCAGGCTTCCGCTACCCCAGCTGAA GGGCTCGGCGCCCAGTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MLAPGRWPKVQIVILPAAPLPPLLFAMSGAGPQGAGKRNRRKGGRKGASGIQMEKKELEELRDRVQCAAVLEQAGFAIDL KESTRRAVKFRGGGAIIIVIHEGRGWFDPLSDAKGDVFGLVEHLDRVPFVEALDHVASLVDFVPKEPVWTHAAREIDLPA GVSERWTKRRKPWPGSMTWRYLRDDRCVPEATIRAAIRHDLVREGPRGSMWAAHRDSEGAVTGWEERGPEWRGFSTGGAK VLFRFGAIHAPRLCVTEAAIDAMSLAALESNRRDSLYVSTGGGWAPATDAAIRLLAARKGILVVAATDNNAQGDIYADRL EAVARDANCGFERHRPRHEDWNEDLCTQLRANSRRGAMS
Sequences:
>Translated_359_residues MLAPGRWPKVQIVILPAAPLPPLLFAMSGAGPQGAGKRNRRKGGRKGASGIQMEKKELEELRDRVQCAAVLEQAGFAIDL KESTRRAVKFRGGGAIIIVIHEGRGWFDPLSDAKGDVFGLVEHLDRVPFVEALDHVASLVDFVPKEPVWTHAAREIDLPA GVSERWTKRRKPWPGSMTWRYLRDDRCVPEATIRAAIRHDLVREGPRGSMWAAHRDSEGAVTGWEERGPEWRGFSTGGAK VLFRFGAIHAPRLCVTEAAIDAMSLAALESNRRDSLYVSTGGGWAPATDAAIRLLAARKGILVVAATDNNAQGDIYADRL EAVARDANCGFERHRPRHEDWNEDLCTQLRANSRRGAMS >Mature_359_residues MLAPGRWPKVQIVILPAAPLPPLLFAMSGAGPQGAGKRNRRKGGRKGASGIQMEKKELEELRDRVQCAAVLEQAGFAIDL KESTRRAVKFRGGGAIIIVIHEGRGWFDPLSDAKGDVFGLVEHLDRVPFVEALDHVASLVDFVPKEPVWTHAAREIDLPA GVSERWTKRRKPWPGSMTWRYLRDDRCVPEATIRAAIRHDLVREGPRGSMWAAHRDSEGAVTGWEERGPEWRGFSTGGAK VLFRFGAIHAPRLCVTEAAIDAMSLAALESNRRDSLYVSTGGGWAPATDAAIRLLAARKGILVVAATDNNAQGDIYADRL EAVARDANCGFERHRPRHEDWNEDLCTQLRANSRRGAMS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39527; Mature: 39527
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAPGRWPKVQIVILPAAPLPPLLFAMSGAGPQGAGKRNRRKGGRKGASGIQMEKKELEE CCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH LRDRVQCAAVLEQAGFAIDLKESTRRAVKFRGGGAIIIVIHEGRGWFDPLSDAKGDVFGL HHHHHHHHHHHHHCCCEEEEHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHH VEHLDRVPFVEALDHVASLVDFVPKEPVWTHAAREIDLPAGVSERWTKRRKPWPGSMTWR HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEH YLRDDRCVPEATIRAAIRHDLVREGPRGSMWAAHRDSEGAVTGWEERGPEWRGFSTGGAK EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCHH VLFRFGAIHAPRLCVTEAAIDAMSLAALESNRRDSLYVSTGGGWAPATDAAIRLLAARKG HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC ILVVAATDNNAQGDIYADRLEAVARDANCGFERHRPRHEDWNEDLCTQLRANSRRGAMS EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLAPGRWPKVQIVILPAAPLPPLLFAMSGAGPQGAGKRNRRKGGRKGASGIQMEKKELEE CCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH LRDRVQCAAVLEQAGFAIDLKESTRRAVKFRGGGAIIIVIHEGRGWFDPLSDAKGDVFGL HHHHHHHHHHHHHCCCEEEEHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHH VEHLDRVPFVEALDHVASLVDFVPKEPVWTHAAREIDLPAGVSERWTKRRKPWPGSMTWR HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEH YLRDDRCVPEATIRAAIRHDLVREGPRGSMWAAHRDSEGAVTGWEERGPEWRGFSTGGAK EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCHH VLFRFGAIHAPRLCVTEAAIDAMSLAALESNRRDSLYVSTGGGWAPATDAAIRLLAARKG HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC ILVVAATDNNAQGDIYADRLEAVARDANCGFERHRPRHEDWNEDLCTQLRANSRRGAMS EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA