Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 16119903
Identifier: 16119903
GI number: 16119903
Start: 106655
End: 107842
Strand: Direct
Name: 16119903
Synonym: Atu6089
Alternate gene names: NA
Gene position: 106655-107842 (Clockwise)
Preceding gene: 16119902
Following gene: 16119905
Centisome position: 49.78
GC content: 58.59
Gene sequence:
>1188_bases ATGTCAGCCCCGATAACGAAGCACAGCCTCAGGTACGACGAAGTGCGGCAGCATCTTCTGGCCCGCTCGGAAATCCTTCT CGCCGACGTCCGCGAAGAAGATCCTTTCGCGCAAGGGCATCCCCTCTGGGCAGCCAACTTTCCCATTGCCCGGCTTGAAC TGGATGCATGGCGCAGGATCCCACAACGCGATACGCTGATCGTTCTGTATGGTCACGATGGCATACGAGACCTCGCTCCC ATCGCCGTCGAGAAACTGAAATCGCTCGGCTACACGAATGTCCATATCCTCGAAGGGGGATTGGAAGCGTGGAAGGCCGA CGGCGGCGAACTGTTCATTGACGTCAACGTGCCGAGCAAGTCATTCGGTGAACTGGTCGAAGCGAAAAGGCACACGCCGC TCTGGGACGCGACCAAGGTAAAGGCGCTTCTCGATGAAGGAGCCAACGCGGTCGTTTTCGATGCGCGCCGTTTTGACGAA TATCAAACGATGAGCATTCCAAAGGGTATCAACGTTCCCGGTGGTGAACTCGTCCTGCGCGCACGGGACCTTGCTCCCGA TCCCGAGACCCTTGTGATCGTCAACTGTGCTGGCCGCACACGCAGCATCATCGGGACGCAGTCTCTCATCAATGCCGGGA TACCGAACAAGGTCGTCGGTCTTCGCAACGGAACAATTGGATGGACTTTGGCAGGTCAGACACTGGAACAGGGAGCGAGC AGGAGCTTCGCTGACGTCGAAGCCAGGGACCGCTCGGAGGCGCAAAAATCCGCTGCAGCCGTCGCCGCGCGCGCGGGTGT TCGGAGCATTGCTCTGTCGGACATCGGCAGCCTTCAAACCCCGGACCGAACGACTTATCTGATCGACGTCCGCACCGAAC CAGAATACCTCGAAGGCCACCTGCCGGGCTTCATGCACGTGCCAGGGGGACAGCTTGTACAGGAGACTGATCACTACGCG CCTGAGCTCTTCAAGATCGGCGGGCTTCCCTTTGGCTTTCAGTTTTTCGGCCTTGGCTTTGGCGGCCTATTCCAAGGTGA ACCGCGGCGAGGGAAGACCCCAACGCGCATGTGCCAATTGTGTCCTTCCATCAGCGGTGTTGCGGACAATCGGTCCCATC TGATCGGGGTTCATTTGATAGGCTGGCATGAGGTTGATGAGGCTCTCGGCGTCCTGAGCCCATTTTGA
Upstream 100 bases:
>100_bases TTTCAGGGCGCGGCAGCTCCCAGCAGGCTGGTCGACTTTGAAGCTGCCAGCCAGACCATCACCTCGTGAATAGCACACGA GATCGATAGCAGGAGAAAAT
Downstream 100 bases:
>100_bases AACCCAGTCCTTGTCCTCCATCCGATAGAGATTACACATGCGGCCCCTCCGCTTCGACCAAATACGGCTACTCTAGCGCA TGTCGCTTGTTTCGCTAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Rhodanese Domain Protein; Rhodanese-Like Protein; Thiosulfate Sulfurtransferase; Rhodanese-Like Domain-Containing Protein; Rhodanese Domain Protein/Cystathionine Beta-Lyase; Sulfurtransferase; Rhodanese-Related Sulfurtransferase; Transferase; Transferase/Cystathione Beta-Lyase; Rhodanese-Like Protein Sulfurtransferase; Rhodanese-Like Domain-Containing; Rhodanese-Like Sulfur Transferase; Cystathionine Beta-Lyase; Thiosulfate Sulfurtransferase Rhodanese-Like; Rhodanese-Like Proteine
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MSAPITKHSLRYDEVRQHLLARSEILLADVREEDPFAQGHPLWAANFPIARLELDAWRRIPQRDTLIVLYGHDGIRDLAP IAVEKLKSLGYTNVHILEGGLEAWKADGGELFIDVNVPSKSFGELVEAKRHTPLWDATKVKALLDEGANAVVFDARRFDE YQTMSIPKGINVPGGELVLRARDLAPDPETLVIVNCAGRTRSIIGTQSLINAGIPNKVVGLRNGTIGWTLAGQTLEQGAS RSFADVEARDRSEAQKSAAAVAARAGVRSIALSDIGSLQTPDRTTYLIDVRTEPEYLEGHLPGFMHVPGGQLVQETDHYA PELFKIGGLPFGFQFFGLGFGGLFQGEPRRGKTPTRMCQLCPSISGVADNRSHLIGVHLIGWHEVDEALGVLSPF
Sequences:
>Translated_395_residues MSAPITKHSLRYDEVRQHLLARSEILLADVREEDPFAQGHPLWAANFPIARLELDAWRRIPQRDTLIVLYGHDGIRDLAP IAVEKLKSLGYTNVHILEGGLEAWKADGGELFIDVNVPSKSFGELVEAKRHTPLWDATKVKALLDEGANAVVFDARRFDE YQTMSIPKGINVPGGELVLRARDLAPDPETLVIVNCAGRTRSIIGTQSLINAGIPNKVVGLRNGTIGWTLAGQTLEQGAS RSFADVEARDRSEAQKSAAAVAARAGVRSIALSDIGSLQTPDRTTYLIDVRTEPEYLEGHLPGFMHVPGGQLVQETDHYA PELFKIGGLPFGFQFFGLGFGGLFQGEPRRGKTPTRMCQLCPSISGVADNRSHLIGVHLIGWHEVDEALGVLSPF >Mature_394_residues SAPITKHSLRYDEVRQHLLARSEILLADVREEDPFAQGHPLWAANFPIARLELDAWRRIPQRDTLIVLYGHDGIRDLAPI AVEKLKSLGYTNVHILEGGLEAWKADGGELFIDVNVPSKSFGELVEAKRHTPLWDATKVKALLDEGANAVVFDARRFDEY QTMSIPKGINVPGGELVLRARDLAPDPETLVIVNCAGRTRSIIGTQSLINAGIPNKVVGLRNGTIGWTLAGQTLEQGASR SFADVEARDRSEAQKSAAAVAARAGVRSIALSDIGSLQTPDRTTYLIDVRTEPEYLEGHLPGFMHVPGGQLVQETDHYAP ELFKIGGLPFGFQFFGLGFGGLFQGEPRRGKTPTRMCQLCPSISGVADNRSHLIGVHLIGWHEVDEALGVLSPF
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43158; Mature: 43026
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPITKHSLRYDEVRQHLLARSEILLADVREEDPFAQGHPLWAANFPIARLELDAWRRI CCCCCCHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCCCEEEEEHHHHHCC PQRDTLIVLYGHDGIRDLAPIAVEKLKSLGYTNVHILEGGLEAWKADGGELFIDVNVPSK CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCEEEEEEECCCH SFGELVEAKRHTPLWDATKVKALLDEGANAVVFDARRFDEYQTMSIPKGINVPGGELVLR HHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHCCCHHEECCCCCCCCCCCCEEEE ARDLAPDPETLVIVNCAGRTRSIIGTQSLINAGIPNKVVGLRNGTIGWTLAGQTLEQGAS ECCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEECHHHHHCCC RSFADVEARDRSEAQKSAAAVAARAGVRSIALSDIGSLQTPDRTTYLIDVRTEPEYLEGH CCCHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHCC LPGFMHVPGGQLVQETDHYAPELFKIGGLPFGFQFFGLGFGGLFQGEPRRGKTPTRMCQL CCCEEECCCCHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHH CPSISGVADNRSHLIGVHLIGWHEVDEALGVLSPF CCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCC >Mature Secondary Structure SAPITKHSLRYDEVRQHLLARSEILLADVREEDPFAQGHPLWAANFPIARLELDAWRRI CCCCCHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCCCEEEEEHHHHHCC PQRDTLIVLYGHDGIRDLAPIAVEKLKSLGYTNVHILEGGLEAWKADGGELFIDVNVPSK CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCEEEEEEECCCH SFGELVEAKRHTPLWDATKVKALLDEGANAVVFDARRFDEYQTMSIPKGINVPGGELVLR HHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHCCCHHEECCCCCCCCCCCCEEEE ARDLAPDPETLVIVNCAGRTRSIIGTQSLINAGIPNKVVGLRNGTIGWTLAGQTLEQGAS ECCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEECHHHHHCCC RSFADVEARDRSEAQKSAAAVAARAGVRSIALSDIGSLQTPDRTTYLIDVRTEPEYLEGH CCCHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHCC LPGFMHVPGGQLVQETDHYAPELFKIGGLPFGFQFFGLGFGGLFQGEPRRGKTPTRMCQL CCCEEECCCCHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHH CPSISGVADNRSHLIGVHLIGWHEVDEALGVLSPF CCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA