Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185413
Identifier: 159185413
GI number: 159185413
Start: 675933
End: 676265
Strand: Reverse
Name: 159185413
Synonym: Atu8056
Alternate gene names: NA
Gene position: 676265-675933 (Counterclockwise)
Preceding gene: 15888025
Following gene: 159184418
Centisome position: 23.8
GC content: 52.55
Gene sequence:
>333_bases ATGCCTTTTTGCGGGTCCGGCGTCGCAAGCGCACCAGACGGGCGGCATGGACTTCCAATCAGTCCTGCCTCTGGAATACG AAAGAGCGGTCTTCGGATCGCCCTTTTCTCGTTGCCGCCCATGCAATCCCGGCGGCCCTGCACCGAAACCAACGGGCCAA ATATTGTTTCTTTTTGGGACACTGATAACTTTACCCGGCTTGTGCTGGGCAAACCGTGCAATAATGACATCACGATAGGC GAATCACAGCGCCGCGAGGCGGTCGATTCCCATTTTTCCTTACTTATAAGTGCGCTATTTAGTTGTGCTTTTTCATATCT CTCGCGATTTTGA
Upstream 100 bases:
>100_bases AGATGCCCGGCGGCGGCATGGGCGGCATGGACTTCTAATCAGTCCTGTCACCGGAATACGAAAGGGCGATCTTCGGATCG CCCTTTTTTCATTGCCGCCC
Downstream 100 bases:
>100_bases AGAAGGAATACATAATATTTTTGATTTTCTCCCCGACTGGTTGTTGTCGGTAGGAAAAAATAAACTATAAGTCAGCCCCC GTAAGGGTTCCGCGACGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MPFCGSGVASAPDGRHGLPISPASGIRKSGLRIALFSLPPMQSRRPCTETNGPNIVSFWDTDNFTRLVLGKPCNNDITIG ESQRREAVDSHFSLLISALFSCAFSYLSRF
Sequences:
>Translated_110_residues MPFCGSGVASAPDGRHGLPISPASGIRKSGLRIALFSLPPMQSRRPCTETNGPNIVSFWDTDNFTRLVLGKPCNNDITIG ESQRREAVDSHFSLLISALFSCAFSYLSRF >Mature_109_residues PFCGSGVASAPDGRHGLPISPASGIRKSGLRIALFSLPPMQSRRPCTETNGPNIVSFWDTDNFTRLVLGKPCNNDITIGE SQRREAVDSHFSLLISALFSCAFSYLSRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11963; Mature: 11832
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFCGSGVASAPDGRHGLPISPASGIRKSGLRIALFSLPPMQSRRPCTETNGPNIVSFWD CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC TDNFTRLVLGKPCNNDITIGESQRREAVDSHFSLLISALFSCAFSYLSRF CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PFCGSGVASAPDGRHGLPISPASGIRKSGLRIALFSLPPMQSRRPCTETNGPNIVSFWD CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC TDNFTRLVLGKPCNNDITIGESQRREAVDSHFSLLISALFSCAFSYLSRF CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA