Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185275
Identifier: 159185275
GI number: 159185275
Start: 2553448
End: 2554308
Strand: Direct
Name: 159185275
Synonym: Atu2579
Alternate gene names: NA
Gene position: 2553448-2554308 (Clockwise)
Preceding gene: 159185274
Following gene: 15889837
Centisome position: 89.86
GC content: 55.4
Gene sequence:
>861_bases ATGGCGTTCGATTCCGACACGAGAAGTCGGGAAAGTAATAGAAATTTTCGGGTAAAGATCTGGGGTGCGCGGGGAACGCT TCCCGTTTCAGGTGAAAACTTCCGAAAATACGGCGGGAATACCATCTGCATCGAGGTGAGATGCGGTGATCACGTTCTTT TGTTCGATGCCGGTTCCGGCCTGCATCCCGCTGGTCTTGCCCTGCGGGCGGAAGGCATTACCGACGTCAACCTGTTCTTC TCGCACTGTCACTACGACCACATCGTCGGCTTTCCCTATTTCAAGCCCTTTTATAACAGCTCCAACGATGTCGCCATCTG GTCGGGCCATCTGGCCGGAAGCATGACCACCCGGGAAATGCTCAAGGATTTCATGAGCCCTCCCTGGTTCCCCGTGCCCT TGGAGATTTGCTGCGCAAAGATCGCCACCCGTGACTTCAAGGCGGGCGACGTGCTCGATGTCCACCCCGGCCTGTCGATC AGAACCGGAATGCTCAACCATCCCGGCAATGCCATCGGATACCGGCTGGACTGGGAAGGTAAGTCGCTGGCCATCATCAC CGACACCGAACATGAGCCCTCCAGCATCGACGAAACCGTTCTTGATCTCATCAGGGATGTCGATCTCTTCCTCTATGACG CCATGTTCACCGATGAGGAAATGGGCCTTTACCGCGGTTATGGCCATTCCTCCTGGCAACAGGCAATCCGCCTTGCCAAA CTTGCCGACGCAAAAAATGTTGGCTTCATCCACCACGCTCCAAGCCGCAGCGACGAGGAGTTGGACGATATCGAAAAGCA GGCGAAAGCTGAATTTAACGGCGCATTCGCGGCGATGGACGGTCAGGTCATAGAAATCTGA
Upstream 100 bases:
>100_bases AAAGGGGCCCGCCAGAAATGTGCGGATATAAGAATCTATAGAAACAACGGGCTTTCATGGGAGGAAAGCGTGCAAGATTC CGTTGTTATTGGGGTGTGCC
Downstream 100 bases:
>100_bases TCCTCATCAGACCTCGGTGTGGAGCGGCCTTCGACCGTTTTTCGATCTGGCGGTGGACGTTCCTCACCACGCTTGTATGC GAACACGCACAATTGACCGC
Product: metal dependant beta lactamase protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metal-Dependent Hydrolase; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Superfamily Hydrolase; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Metal Dependant Beta Lactamase Protein; Metallo-Beta-Lactamase Superfamily; Phytochrome Sensor Protein; Metal-Dependent Hydrolase Of Beta-Lactamase Superfamily I; GAF Domain/HD Domain Protein; Beta-Lactamase Family Hydrolase; Conserved Beta-Lactamase Domain Protein; Sulphohydrolase/Glycosulfatase Zn-Dependent Hydrolase
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MAFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSGLHPAGLALRAEGITDVNLFF SHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREMLKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSI RTGMLNHPGNAIGYRLDWEGKSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAK LADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI
Sequences:
>Translated_286_residues MAFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSGLHPAGLALRAEGITDVNLFF SHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREMLKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSI RTGMLNHPGNAIGYRLDWEGKSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAK LADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI >Mature_285_residues AFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSGLHPAGLALRAEGITDVNLFFS HCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREMLKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSIR TGMLNHPGNAIGYRLDWEGKSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAKL ADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI
Specific function: Unknown
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31907; Mature: 31776
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSG CCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEEEEECCEEEEEECCCC LHPAGLALRAEGITDVNLFFSHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREM CCCCCEEEEECCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH LKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSIRTGMLNHPGNAIGYRLDWEG HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCEEEEEEECCC KSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAK CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHH LADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCEEEEECCEEEEC >Mature Secondary Structure AFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSG CCCCCCCCHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEEEEECCEEEEEECCCC LHPAGLALRAEGITDVNLFFSHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREM CCCCCEEEEECCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH LKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSIRTGMLNHPGNAIGYRLDWEG HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCEEEEEEECCC KSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAK CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHH LADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCEEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA