Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184923
Identifier: 159184923
GI number: 159184923
Start: 1786405
End: 1787559
Strand: Reverse
Name: 159184923
Synonym: Atu1800
Alternate gene names: NA
Gene position: 1787559-1786405 (Counterclockwise)
Preceding gene: 15889105
Following gene: 159184922
Centisome position: 62.91
GC content: 64.59
Gene sequence:
>1155_bases ATGGCCGCCACGACAAAGAAGCCGGAAATCGCCGCACAGCACAAGCCGCAGACGGCCGCAGCAGCCGTTGCTTCGCCGGC GACCGGCGCGCAGCCGGGGCATTATGTGGATCCCGCCGTCGCATCGGCGGCCGGCGTAAACAACGTTCCGGCCCAGCACC AGGCGCCCGGTAGTCCCGCACAGGGTTATGGTGCAGCCGCCGATATAGGCGGACTGACGACGCAGCCGACGGCGATTTCC GCCGGAACGTCCAGCATCTATTCAACAGCGACGCATTCCGGCTCTGCAGCCGCTCAAGGCATGGCCGCAGCCCAGGGCGG TTCCGCCCAGAAAATCATTCCTGCCGTCAGCAGCGTCTATTCCGCGCCGATACAGCCGTCCCAGCCGCAGCCCGTTGCCG CGCCGGTCGCTGTTCCGGTAGCCGCTCAGGTGCCGCCGGAACAGCATAGCGAAAATCGTCAGCCCGCCGCCGTGCCGGTG CCGCAGCCGGAACAGCGCGCGGCTGCACAGCCTGCCACCAATGCCGGAGCGACGGTTGAGGGGCGGGAAGGCGAGGGCAG GAGCCTGACGCTTGCGGCGTTTTTCGCCGGTGCCGCCAAGAAGCGTCTGCCGAAAATGATCGAAAGCGGCACGGCCGGTA ACACCGAGGTTGCCGCCTTGTCCGGAGCGGCTGACGGGTCGATGGGTATTGCGCTTTCCGGCCGCTCGATGATGTCCGAG GAATTCGACGACGCTCACCTCGATGAAGAGGATGACCAGCCCAACGGCCTGATGAAGCTCGCCTCGCTTTCCGGCCTCAC CCGCGTTTCCCCGAACGGGCTTTTCCTGCAGACGGACCACGTCGAAGTCGGCTGTTTCAAGCCGGAACTGGTACGGATGA TCAAGGATGTGGAGCGTCACTATAACAGTCCGGCGATCGTCACCTCCGGTTATCGCCCGCCGAAGGGAATTAGGCAGGGC TCCAAGCACTACACTTGCGATGCCGCCGACATCCAGATCAAGGGTGTTTCCAAATGGGAACTCGCCACCTATCTGCGTTC CCTGCCGGATCGTGGCGGCGTGGGCACCTATTGCCACACTGAGTCAGTGCATATGGATACCGGCGAAGCGCGGGACTGGA ACTGGCGCTGCCGCCGAACCGCCGCGCGCAAATAA
Upstream 100 bases:
>100_bases TGCAGAGAATGCGAAAGGACGCCTTTCCTGTAAGCGTTTTGTCGTCGCGGTTTCGCTGCTCGGGCTTTCCGGTTGCGTTT CGGCGGTGACGGATGACGAG
Downstream 100 bases:
>100_bases GCCCGCTCGTTTTTTCGGCATCACGGCCATTCGGCGCACCTTCCGATAAGACTGGAGATCGCAGCCGCATGGACGGATGG CCCGGCTTGCTATAGGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MAATTKKPEIAAQHKPQTAAAAVASPATGAQPGHYVDPAVASAAGVNNVPAQHQAPGSPAQGYGAAADIGGLTTQPTAIS AGTSSIYSTATHSGSAAAQGMAAAQGGSAQKIIPAVSSVYSAPIQPSQPQPVAAPVAVPVAAQVPPEQHSENRQPAAVPV PQPEQRAAAQPATNAGATVEGREGEGRSLTLAAFFAGAAKKRLPKMIESGTAGNTEVAALSGAADGSMGIALSGRSMMSE EFDDAHLDEEDDQPNGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERHYNSPAIVTSGYRPPKGIRQG SKHYTCDAADIQIKGVSKWELATYLRSLPDRGGVGTYCHTESVHMDTGEARDWNWRCRRTAARK
Sequences:
>Translated_384_residues MAATTKKPEIAAQHKPQTAAAAVASPATGAQPGHYVDPAVASAAGVNNVPAQHQAPGSPAQGYGAAADIGGLTTQPTAIS AGTSSIYSTATHSGSAAAQGMAAAQGGSAQKIIPAVSSVYSAPIQPSQPQPVAAPVAVPVAAQVPPEQHSENRQPAAVPV PQPEQRAAAQPATNAGATVEGREGEGRSLTLAAFFAGAAKKRLPKMIESGTAGNTEVAALSGAADGSMGIALSGRSMMSE EFDDAHLDEEDDQPNGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERHYNSPAIVTSGYRPPKGIRQG SKHYTCDAADIQIKGVSKWELATYLRSLPDRGGVGTYCHTESVHMDTGEARDWNWRCRRTAARK >Mature_383_residues AATTKKPEIAAQHKPQTAAAAVASPATGAQPGHYVDPAVASAAGVNNVPAQHQAPGSPAQGYGAAADIGGLTTQPTAISA GTSSIYSTATHSGSAAAQGMAAAQGGSAQKIIPAVSSVYSAPIQPSQPQPVAAPVAVPVAAQVPPEQHSENRQPAAVPVP QPEQRAAAQPATNAGATVEGREGEGRSLTLAAFFAGAAKKRLPKMIESGTAGNTEVAALSGAADGSMGIALSGRSMMSEE FDDAHLDEEDDQPNGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERHYNSPAIVTSGYRPPKGIRQGS KHYTCDAADIQIKGVSKWELATYLRSLPDRGGVGTYCHTESVHMDTGEARDWNWRCRRTAARK
Specific function: Unknown
COG id: COG3108
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39639; Mature: 39507
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATTKKPEIAAQHKPQTAAAAVASPATGAQPGHYVDPAVASAAGVNNVPAQHQAPGSPA CCCCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC QGYGAAADIGGLTTQPTAISAGTSSIYSTATHSGSAAAQGMAAAQGGSAQKIIPAVSSVY CCCCCHHHCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHCHHHHCCCCCHHHHHHHHHHH SAPIQPSQPQPVAAPVAVPVAAQVPPEQHSENRQPAAVPVPQPEQRAAAQPATNAGATVE HCCCCCCCCCCCCCCEECCEECCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEE GREGEGRSLTLAAFFAGAAKKRLPKMIESGTAGNTEVAALSGAADGSMGIALSGRSMMSE CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCHHHHH EFDDAHLDEEDDQPNGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERH HCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEEEEECCEEEECCCHHHHHHHHHHHHH YNSPAIVTSGYRPPKGIRQGSKHYTCDAADIQIKGVSKWELATYLRSLPDRGGVGTYCHT CCCCEEEECCCCCCHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCCEEEC ESVHMDTGEARDWNWRCRRTAARK CCEECCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure AATTKKPEIAAQHKPQTAAAAVASPATGAQPGHYVDPAVASAAGVNNVPAQHQAPGSPA CCCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC QGYGAAADIGGLTTQPTAISAGTSSIYSTATHSGSAAAQGMAAAQGGSAQKIIPAVSSVY CCCCCHHHCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHCHHHHCCCCCHHHHHHHHHHH SAPIQPSQPQPVAAPVAVPVAAQVPPEQHSENRQPAAVPVPQPEQRAAAQPATNAGATVE HCCCCCCCCCCCCCCEECCEECCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEE GREGEGRSLTLAAFFAGAAKKRLPKMIESGTAGNTEVAALSGAADGSMGIALSGRSMMSE CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCHHHHH EFDDAHLDEEDDQPNGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERH HCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEEEEECCEEEECCCHHHHHHHHHHHHH YNSPAIVTSGYRPPKGIRQGSKHYTCDAADIQIKGVSKWELATYLRSLPDRGGVGTYCHT CCCCEEEECCCCCCHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCCEEEC ESVHMDTGEARDWNWRCRRTAARK CCEECCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA