Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184742
Identifier: 159184742
GI number: 159184742
Start: 1386783
End: 1389212
Strand: Direct
Name: 159184742
Synonym: Atu1393
Alternate gene names: NA
Gene position: 1386783-1389212 (Clockwise)
Preceding gene: 15888717
Following gene: 15888732
Centisome position: 48.8
GC content: 61.77
Gene sequence:
>2430_bases ATGCAGGGCGGATTGCCCCGCACGGCGGATATCCTTTCGCCGCTGCGCCGGACCGGCGAGGTCGCGACATATGATTTACC GGCCCTTGTCAGCAGGCCGAAACCGCAAGCTGCCGTTATCCAGAAAATCACCGCCTGCCTCGCCGAGGAACGCGCATTCG GCCATGATTTTCTTTTCGTGCCGGTCTTCATCGGCTGTGGAGCGATCCTCTGGTTTTCGCTGGATGCAGCACCTTCATTG CCGCTTCTCGTCGTTCTTTTTTTGCTCGCCGCCGGCCTGGCATTCGCCACCCGATATCGCTCGACCCTGGCAGCCACGGC CTGCAGCATCGTCGCGCTGCTGTTGCTGGGTATGCTTTTTGCCGAATTCGAAACGCGGCGGGCAGGGACAGTGGTGCTGG ATACGCCCGTCACCACCACCCTATCAGGTACGGTGATACGCCGGGAGGTCGATGCCCGCGGCGACTGGCGGTATGTGGTG CAACTGGCTGCGACCGAAGCGCCGACAGTGTCTCGCCCGCCGGGAAAGGTCTCTTTGCTGGCCCGCGGCGGCGGCGAGCC GGCGGCACTCGGCGCCACCATCCGCGGCAAGGCACGGCTTTCGCTGCCGTCCGGTCCGGCCTTGCCCGGTCTCAATGATT TCGCCTTCGCCTCCTATTTCAAGGGCATCGGTGCCACCGGCTTTTTTTATAAGCCGCCGCAGACGGTAACGGCCCCTGAT ATCGACGCAAAAAAGGACTGGCTGGAATGGGCCGATATGCGGCTTTACGGCCTGCGCACCGCCATTGCCGAGCGCATTCG CAACACCATCGGTGGTGACGCCGGCGCTTTTGCCGCCTCCATCGTCACCGATGAGAGACAGGCCATATCGGCCGGGACGA TGGAAGCCCTGCGGCTTTCCGGCCTTGCCCATATCGTCGCCATATCCGGGCTCAACATGGCGCTGGCTTCAGGCATATTC TTCGTGGGGCTGAGGCTTGCCTTCAGCCTGTTTCCGGCTTTCGCGCAGCGCTGGCCGGTGAAGAAGATGTCCGCCTTCGC GGCGCTCCTGATGACGCTTGCCTATTACCTGATTTCCGGTTTTGCCGTTTCTGCCGAGCGTGCCTGGCTGATGACGTCGG TGATGTTGATTGCGGTGCTGTTCGATCAGCCTTCGCTCAGCCTCAGGAATGTTGCATTGTCCGCTCTGGTCATCCTCGCT CTGTCTCCCTCGGAAATCATGGGGCCGAGCTTCCAGATGTCCTTTGCCGCGACAATAGCGCTTGTTGCCGCTTATGCCGC CTGGAGCCGCTGGCGCACCGACCGGGAGCGTCTGTTCATCGGGCGCAAACCGGCGTGGATGACGGTGGCGGGAACGGCAG GCGCCGTCATCGGCGGTGTCGTCACCACATCGCTGATCGGCGGACTTTCGACGGCGATCTATTCGGTCGAGCATTTCCAG CGTGTCACCACCTATGGACTTTTCGCCAATCTGGCGGCCATGCCGCTGATGTCGCTGGTCGTCATGCCCTTCGGCCTCAT CGCCATGCTGTTGATGCCCTTTGGGCTGGACGCGCCATTTTTGAAGGTTATGGGTTACGGCATGGCGCTTGTCATCGAGG TTGCGCAGGAGGTGGCGTCCTGGGGCGGCAGCGCAGCGACCGGGCGGCCGCATGGCTGGTTTATCGGCGTCGCCTCCGTG GGTTTTCTGCTGCTGACATTGCTGCGCACCCGGCTGGCACTGCTTGGAGTTCCACCTTTGCTTCTCGCCTTCGGTCTCTC CGGCGCTGTCGCCCAACGCAGTCTGCCCGATCTGCTTATCCATGAGGAAGGTAAGCTGGTGGCGCTTCTGGACGAGGGCA GGGTCTACACCACAAAAACGCGGCCGCAGGGCTTCATCTATGAGCAATGGCAGAGGGCGCTGCTGTTGCCTGAGAAACCG CTCTCACCGGTCCTTCTCAAGACGGGGGTTCCCGCAACCACCATTGCTCTCAGCGCAAAATCGAAGCTGGCGCCGGAGGA TATGAAGGCAGTGGCGCGGGAGATGGTAACGACGCTGAGAGATGCGGCGCCTGGCGTCTTCACCTGCAGGACAGGCATTT GGTGTGCGGCGCGTGCGAAAAGCGGCGAGTTTATCATCGTGCTGGAAGATGGCCGATTTGCCGGGAAAGCCTGTGACATC GCCGATATCGTCATCGTCTCCCGCAGAACGTCGTTTACGCAATGCCGCTCGGGAGCCTTGCTGCTCAACCGCGACATATT AAGGCGCATCGGCTCGGTGGAGATAAATTTTGCCGGCAGCGATCAGGCTGGGGTGGTAGGGCGGATGCGCGCAGCAACCG CCGGCACAGACAGGCCGTGGAGCGACCATCGCTTCTACGATTGGAAGAGCGGCCGTTTTGACCATGACGTGCCTGAAGCC GTGACCGGGTTACTGACGGCATCGCAATGA
Upstream 100 bases:
>100_bases AATCCCCCGCGTCGCCTGCAAACCTGTTTCCGGTGCGGCAGGGGCACGGCGCAGATTGCTTGGTCAAGGGGAAAAACAGC ATTTCGGGTATGCCGAAACG
Downstream 100 bases:
>100_bases GTGCCGCCAGCATGGTTCGTCATGCCGTGGCGCGCAAATCCGACGTCAATTCGCCAATGCCGCCGATTTCCTCTTCATGC GCGGCATCGCGCCATGTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Competence Protein; ComEC/Rec2 Family Protein; DNA Uptake Protein; ComEC/Rec2-Like Protein; DNA Internalization-Related Competence; DNA Translocation Competence Protein ComA; DNA Translocation Competence; Competence Locus E; DNA Internalization-Related Competence Protein; Transmembrane DNA Uptake Competence-Related Protein; DNA Uptake Protein ComEC; ComEc/Rec2-Like Protein
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFVPVFIGCGAILWFSLDAAPSL PLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLFAEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVV QLAATEAPTVSRPPGKVSLLARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLSGLAHIVAISGLNMALASGIF FVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISGFAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILA LSPSEIMGPSFQMSFAATIALVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVASWGGSAATGRPHGWFIGVASV GFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLIHEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKP LSPVLLKTGVPATTIALSAKSKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPWSDHRFYDWKSGRFDHDVPEA VTGLLTASQ
Sequences:
>Translated_809_residues MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFVPVFIGCGAILWFSLDAAPSL PLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLFAEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVV QLAATEAPTVSRPPGKVSLLARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLSGLAHIVAISGLNMALASGIF FVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISGFAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILA LSPSEIMGPSFQMSFAATIALVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVASWGGSAATGRPHGWFIGVASV GFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLIHEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKP LSPVLLKTGVPATTIALSAKSKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPWSDHRFYDWKSGRFDHDVPEA VTGLLTASQ >Mature_809_residues MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFVPVFIGCGAILWFSLDAAPSL PLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLFAEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVV QLAATEAPTVSRPPGKVSLLARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLSGLAHIVAISGLNMALASGIF FVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISGFAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILA LSPSEIMGPSFQMSFAATIALVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVASWGGSAATGRPHGWFIGVASV GFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLIHEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKP LSPVLLKTGVPATTIALSAKSKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPWSDHRFYDWKSGRFDHDVPEA VTGLLTASQ
Specific function: Unknown
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86567; Mature: 86567
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFV CCCCCCCHHHHHHHHHHCCCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH PVFIGCGAILWFSLDAAPSLPLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLF HHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVVQLAATEAPTVSRPPGKVSLL HHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEE ARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD ECCCCCCHHCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCC IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHH GLAHIVAISGLNMALASGIFFVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC FAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILALSPSEIMGPSFQMSFAATIA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCHHHCCCCHHHHHHHHHH LVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ HHHHHHHHHHHCCCCHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHH WGGSAATGRPHGWFIGVASVGFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLI CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCCEE HEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKPLSPVLLKTGVPATTIALSAK ECCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHEEEECCC SKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCH ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPW HHEEEEECCCCHHHHCCCCEEECHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCC SDHRFYDWKSGRFDHDVPEAVTGLLTASQ CCCCEECCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFV CCCCCCCHHHHHHHHHHCCCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH PVFIGCGAILWFSLDAAPSLPLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLF HHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVVQLAATEAPTVSRPPGKVSLL HHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEE ARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD ECCCCCCHHCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCC IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHH GLAHIVAISGLNMALASGIFFVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC FAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILALSPSEIMGPSFQMSFAATIA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCHHHCCCCHHHHHHHHHH LVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ HHHHHHHHHHHCCCCHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHH WGGSAATGRPHGWFIGVASVGFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLI CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCCEE HEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKPLSPVLLKTGVPATTIALSAK ECCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHEEEECCC SKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCH ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPW HHEEEEECCCCHHHHCCCCEEECHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCC SDHRFYDWKSGRFDHDVPEAVTGLLTASQ CCCCEECCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA