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The map label for this gene is ndoR [H]

Identifier: 159184661

GI number: 159184661

Start: 1189005

End: 1190012

Strand: Direct

Name: ndoR [H]

Synonym: Atu1196

Alternate gene names: 159184661

Gene position: 1189005-1190012 (Clockwise)

Preceding gene: 15888531

Following gene: 15888533

Centisome position: 41.84

GC content: 61.71

Gene sequence:

>1008_bases
ATGCCTGGCAACACAATCTATCTGCCACAGATCGGCCGCAGCATCATGGCGGCTGAGGGTGAGACCGTGCTTCAGGCCGC
GCTCGCCGCCGGCATTGCCTATCCGCGTGGCTGTCGCATGGGTCGCTGCGGCGCCTGCAAATCGCACCTCATCTCCGGTG
AGATCGATCTTCTCAAGCATACACCGTTCTCATTGACCGAAGAGGAAAAGGCAGAAGGCCTCACTCTTGCCTGCCGCGCC
GTGCCCGCGAGCGACGTGACGATCGGCTGGCTCGACGGCGAGGATGAATTTGCCGATATCCCGACCGGCCGTTTCGAGGG
TGTGGTTGAGGAAGCGGTGGATGCGACCCATGATATCAAGCTCATCCGCATCAGGCTCGAGGATCGCGCGCAGTTCACCT
TCAAACCCGGGCAATATGTGCGCCTGCTTTATCCGGACTCTTCGCCGCGCGATTATTCGATCGCGAGCAGGGTGGACGAG
GAGCTGATTGAATTTCACATCCGGCATGTTCCCGGCGGTATGACGAGCGGCCGCATCTTCTCGCTCGCCAGGGCGGGTGA
TCCCGTCACGATCGTGGGGCCTTTTGGCTCCTCCTTCCTGCGGGAAAAACATTGCGGACCGATCCTCGGTATTGCCGGCG
GCTCGGGGCTTGCCCCCGTAAAGGCCGTGGTCGAAGCGGCGCTCGCAACCGGCCGTGAACGCCCGGTTCACGTCTATTTC
GGCGCCCGCGCCGAGCGCGACCTTTATATGCTCGACCGTTTTCAGGACCTCACCACCCGGCACGGCAATCTGAGCTTCGT
TCCGGTTCTCTCGAATGAGGACCATGCCAATATCCGTCGCGGTTATGTCGGCGCCGCGGTGGCGGATGATTTCGACGATC
TCGATGGCTGGAAAGCCTATATTGCCGGCCCGCCGGCCATGATCGAGGCAACGGTGCCGCAGCTGCTGGCGCGCGGCATG
CGGACGGCCGACATTCATGCGGATGTATTTTTCACCCCGGAAAGATAG

Upstream 100 bases:

>100_bases
ATTGACGAATGCGCTGCGTCTTAAAAGCTTCCGTGCACCGCTGGTGGACAGATCGTCCGACCTGCAGCTCGCAGCGGCGG
AATAGGAGGCGGATGTGGTG

Downstream 100 bases:

>100_bases
GAGCAGGATCGATGAACATTGGCACAGCCGCCACCGCCTCCGGTGTTTCTGCAAAGATGATTAGGCATTACGAGATGATC
GGCCTGATCAAATCGGCAAA

Product: naphthalene 1,2-dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MPGNTIYLPQIGRSIMAAEGETVLQAALAAGIAYPRGCRMGRCGACKSHLISGEIDLLKHTPFSLTEEEKAEGLTLACRA
VPASDVTIGWLDGEDEFADIPTGRFEGVVEEAVDATHDIKLIRIRLEDRAQFTFKPGQYVRLLYPDSSPRDYSIASRVDE
ELIEFHIRHVPGGMTSGRIFSLARAGDPVTIVGPFGSSFLREKHCGPILGIAGGSGLAPVKAVVEAALATGRERPVHVYF
GARAERDLYMLDRFQDLTTRHGNLSFVPVLSNEDHANIRRGYVGAAVADDFDDLDGWKAYIAGPPAMIEATVPQLLARGM
RTADIHADVFFTPER

Sequences:

>Translated_335_residues
MPGNTIYLPQIGRSIMAAEGETVLQAALAAGIAYPRGCRMGRCGACKSHLISGEIDLLKHTPFSLTEEEKAEGLTLACRA
VPASDVTIGWLDGEDEFADIPTGRFEGVVEEAVDATHDIKLIRIRLEDRAQFTFKPGQYVRLLYPDSSPRDYSIASRVDE
ELIEFHIRHVPGGMTSGRIFSLARAGDPVTIVGPFGSSFLREKHCGPILGIAGGSGLAPVKAVVEAALATGRERPVHVYF
GARAERDLYMLDRFQDLTTRHGNLSFVPVLSNEDHANIRRGYVGAAVADDFDDLDGWKAYIAGPPAMIEATVPQLLARGM
RTADIHADVFFTPER
>Mature_334_residues
PGNTIYLPQIGRSIMAAEGETVLQAALAAGIAYPRGCRMGRCGACKSHLISGEIDLLKHTPFSLTEEEKAEGLTLACRAV
PASDVTIGWLDGEDEFADIPTGRFEGVVEEAVDATHDIKLIRIRLEDRAQFTFKPGQYVRLLYPDSSPRDYSIASRVDEE
LIEFHIRHVPGGMTSGRIFSLARAGDPVTIVGPFGSSFLREKHCGPILGIAGGSGLAPVKAVVEAALATGRERPVHVYFG
ARAERDLYMLDRFQDLTTRHGNLSFVPVLSNEDHANIRRGYVGAAVADDFDDLDGWKAYIAGPPAMIEATVPQLLARGMR
TADIHADVFFTPER

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. Transfers electrons from ferredoxin (ndoA) to NADH [H]

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI2367314, Length=194, Percent_Identity=30.9278350515464, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR001709
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR001221
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: =1.18.1.3 [H]

Molecular weight: Translated: 36434; Mature: 36303

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGNTIYLPQIGRSIMAAEGETVLQAALAAGIAYPRGCRMGRCGACKSHLISGEIDLLKH
CCCCEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEEC
TPFSLTEEEKAEGLTLACRAVPASDVTIGWLDGEDEFADIPTGRFEGVVEEAVDATHDIK
CCCCCCCHHHHCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LIRIRLEDRAQFTFKPGQYVRLLYPDSSPRDYSIASRVDEELIEFHIRHVPGGMTSGRIF
EEEEEEECCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SLARAGDPVTIVGPFGSSFLREKHCGPILGIAGGSGLAPVKAVVEAALATGRERPVHVYF
EEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
GARAERDLYMLDRFQDLTTRHGNLSFVPVLSNEDHANIRRGYVGAAVADDFDDLDGWKAY
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCEECCHHHCCCCCCCCCEEE
IAGPPAMIEATVPQLLARGMRTADIHADVFFTPER
ECCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
PGNTIYLPQIGRSIMAAEGETVLQAALAAGIAYPRGCRMGRCGACKSHLISGEIDLLKH
CCCEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEEC
TPFSLTEEEKAEGLTLACRAVPASDVTIGWLDGEDEFADIPTGRFEGVVEEAVDATHDIK
CCCCCCCHHHHCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LIRIRLEDRAQFTFKPGQYVRLLYPDSSPRDYSIASRVDEELIEFHIRHVPGGMTSGRIF
EEEEEEECCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SLARAGDPVTIVGPFGSSFLREKHCGPILGIAGGSGLAPVKAVVEAALATGRERPVHVYF
EEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
GARAERDLYMLDRFQDLTTRHGNLSFVPVLSNEDHANIRRGYVGAAVADDFDDLDGWKAY
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCEECCHHHCCCCCCCCCEEE
IAGPPAMIEATVPQLLARGMRTADIHADVFFTPER
ECCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486285; 8787402; 2294092 [H]