Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184656
Identifier: 159184656
GI number: 159184656
Start: 1180014
End: 1181390
Strand: Direct
Name: 159184656
Synonym: Atu1187
Alternate gene names: NA
Gene position: 1180014-1181390 (Clockwise)
Preceding gene: 15888523
Following gene: 159184657
Centisome position: 41.53
GC content: 59.69
Gene sequence:
>1377_bases ATGCCTCTCTCATATGCCCACTCCTCGGGTGATGGCAGCAACCGCCTCTTCGATGTTCCTTGCGAATATCTCTCGAAAGC GCACGTTACGGTGCGGGTCGATGGCGTCCTTGTGCCGTTCTCGTGGATCGATACCTACCGCCTCCAGACGACCACGGCTC CTCCCTCGGGTTCCGTTGTGGAGGTACGAAGGGTGACGCCAAGGGTGGACCGTCTCGTTACGTTCACCGATGGCTCCACT CTGGTCCAGTCGGACCTCAACACCTCGACCCTCCAGTCGTTCTTTCTTGCTCAGGAAGCGTTCGATCAAGGCGCGGCATC CATGGCTGTCACTGAGGACGGACAGTTCTCGGCGCTCAACCGCCGCATTACAAGCCTTGCAAACCCTGTCAGTGCCCAAG ACGCCGTGACAAAGCTTTGGGCTGAGACTGCTATGTCCTCCCAACTGGTCCTCGCAACGCAAAAGGCTCTCGATGCTGCG ACCTCGGCTGCACAGTCGGAAGCTTCTGCGGCCTTTTCAGACAGTCGTGCCGCCGCCGCCCTGGCATCCAAGAATGCCGC TGCTGGTTCGGCCACCGCTGCCGCTCAGTCGGAAGCCAATGCCCTCGCAAACAAGAACCAGACGCAGCTTGATCGTGCCG CTACGGCTGCCGATAGGGTGCAGACTGGCTTGGACCGGGAAGCTTCCGCTGCGTCCGCTGCTGCCGCCAAGAAGTCGGCG GAAGATGCTGCCTTGTTCGACCCGTCGAGCTACTACACAAAGTCTCAAGCTGATGCGAGATATCCCGCGAAGGCTGATGC TGCGACCAAGGCTCAGCTGGACGCTCTCGCGGCAATTGTTGATGACCCGTGGGCGACACAGCCGCTAGGTGTCCCTATCC CCGCAAGCATGGGCATTGCCGGGACCGCGTATCCGCCGACCAACAACCCGCGCTATCGCTACATCATCCTTACTGCGGGG CAGACAGGCTCGGGCGGATACAACAACGGCGTACTCACTTCGGAGGCAGTTACGGGAAGTTGGCCCGCAATCAGCGCTGC CGCCATCATCAACTTGGCCGGTTCTCCATTCAATGGCAGGCAGGTTCAATTGATCAACACGTCCCGCGCATTCTTGCGTC CGGGCAACGGCGGCGCTCATCAATACTTCGCAGTGCAGTCACACAACCACGGCGTCAACGACCCAGGACACGCCCACGGT GGTGTTCAGAACGGCACGGCCTCTACGGGCCGGTCAACCTCAGTCGATCAGCCTCCCGCCGTCTTTTCTTTCGGTAATAC GTGGGGGGCAACCACGGGCATCTCGATCCAATACGCAGGTGATGAAGAAACTCGCCCGCGCAACTTTGGTGTCGATTACG TAATGAGGATTAAATAA
Upstream 100 bases:
>100_bases CTCCCGGAGTGGTCACCGAAGAAATAACTGCACCCGATCAAACCTTTCGGCCCTCGTCACATAACAGTGGCGGGGGCTTT CTTCGTTTTTGGAGAATGCA
Downstream 100 bases:
>100_bases TGCCATACGCATTCGAAGGCGGTGTTGCGACCGACCCCCAAGTCGGTGCCGTCGAAATTACTTGGGAGCAGTATCAGAAC GCTATTGCTGGTTTCACGGC
Product: phage tail fiber protein
Products: NA
Alternate protein names: Phage Tail Protein
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MPLSYAHSSGDGSNRLFDVPCEYLSKAHVTVRVDGVLVPFSWIDTYRLQTTTAPPSGSVVEVRRVTPRVDRLVTFTDGST LVQSDLNTSTLQSFFLAQEAFDQGAASMAVTEDGQFSALNRRITSLANPVSAQDAVTKLWAETAMSSQLVLATQKALDAA TSAAQSEASAAFSDSRAAAALASKNAAAGSATAAAQSEANALANKNQTQLDRAATAADRVQTGLDREASAASAAAAKKSA EDAALFDPSSYYTKSQADARYPAKADAATKAQLDALAAIVDDPWATQPLGVPIPASMGIAGTAYPPTNNPRYRYIILTAG QTGSGGYNNGVLTSEAVTGSWPAISAAAIINLAGSPFNGRQVQLINTSRAFLRPGNGGAHQYFAVQSHNHGVNDPGHAHG GVQNGTASTGRSTSVDQPPAVFSFGNTWGATTGISIQYAGDEETRPRNFGVDYVMRIK
Sequences:
>Translated_458_residues MPLSYAHSSGDGSNRLFDVPCEYLSKAHVTVRVDGVLVPFSWIDTYRLQTTTAPPSGSVVEVRRVTPRVDRLVTFTDGST LVQSDLNTSTLQSFFLAQEAFDQGAASMAVTEDGQFSALNRRITSLANPVSAQDAVTKLWAETAMSSQLVLATQKALDAA TSAAQSEASAAFSDSRAAAALASKNAAAGSATAAAQSEANALANKNQTQLDRAATAADRVQTGLDREASAASAAAAKKSA EDAALFDPSSYYTKSQADARYPAKADAATKAQLDALAAIVDDPWATQPLGVPIPASMGIAGTAYPPTNNPRYRYIILTAG QTGSGGYNNGVLTSEAVTGSWPAISAAAIINLAGSPFNGRQVQLINTSRAFLRPGNGGAHQYFAVQSHNHGVNDPGHAHG GVQNGTASTGRSTSVDQPPAVFSFGNTWGATTGISIQYAGDEETRPRNFGVDYVMRIK >Mature_457_residues PLSYAHSSGDGSNRLFDVPCEYLSKAHVTVRVDGVLVPFSWIDTYRLQTTTAPPSGSVVEVRRVTPRVDRLVTFTDGSTL VQSDLNTSTLQSFFLAQEAFDQGAASMAVTEDGQFSALNRRITSLANPVSAQDAVTKLWAETAMSSQLVLATQKALDAAT SAAQSEASAAFSDSRAAAALASKNAAAGSATAAAQSEANALANKNQTQLDRAATAADRVQTGLDREASAASAAAAKKSAE DAALFDPSSYYTKSQADARYPAKADAATKAQLDALAAIVDDPWATQPLGVPIPASMGIAGTAYPPTNNPRYRYIILTAGQ TGSGGYNNGVLTSEAVTGSWPAISAAAIINLAGSPFNGRQVQLINTSRAFLRPGNGGAHQYFAVQSHNHGVNDPGHAHGG VQNGTASTGRSTSVDQPPAVFSFGNTWGATTGISIQYAGDEETRPRNFGVDYVMRIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47672; Mature: 47541
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSYAHSSGDGSNRLFDVPCEYLSKAHVTVRVDGVLVPFSWIDTYRLQTTTAPPSGSVV CCCCCCCCCCCCCCCEEECCHHHHCCCEEEEEECCEEEEEHHCCEEEEEEECCCCCCCEE EVRRVTPRVDRLVTFTDGSTLVQSDLNTSTLQSFFLAQEAFDQGAASMAVTEDGQFSALN EEEECCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH RRITSLANPVSAQDAVTKLWAETAMSSQLVLATQKALDAATSAAQSEASAAFSDSRAAAA HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LASKNAAAGSATAAAQSEANALANKNQTQLDRAATAADRVQTGLDREASAASAAAAKKSA HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC EDAALFDPSSYYTKSQADARYPAKADAATKAQLDALAAIVDDPWATQPLGVPIPASMGIA CCCEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GTAYPPTNNPRYRYIILTAGQTGSGGYNNGVLTSEAVTGSWPAISAAAIINLAGSPFNGR CCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHEEEECCCCCCCC QVQLINTSRAFLRPGNGGAHQYFAVQSHNHGVNDPGHAHGGVQNGTASTGRSTSVDQPPA EEEEEECCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VFSFGNTWGATTGISIQYAGDEETRPRNFGVDYVMRIK EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure PLSYAHSSGDGSNRLFDVPCEYLSKAHVTVRVDGVLVPFSWIDTYRLQTTTAPPSGSVV CCCCCCCCCCCCCCEEECCHHHHCCCEEEEEECCEEEEEHHCCEEEEEEECCCCCCCEE EVRRVTPRVDRLVTFTDGSTLVQSDLNTSTLQSFFLAQEAFDQGAASMAVTEDGQFSALN EEEECCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH RRITSLANPVSAQDAVTKLWAETAMSSQLVLATQKALDAATSAAQSEASAAFSDSRAAAA HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LASKNAAAGSATAAAQSEANALANKNQTQLDRAATAADRVQTGLDREASAASAAAAKKSA HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC EDAALFDPSSYYTKSQADARYPAKADAATKAQLDALAAIVDDPWATQPLGVPIPASMGIA CCCEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GTAYPPTNNPRYRYIILTAGQTGSGGYNNGVLTSEAVTGSWPAISAAAIINLAGSPFNGR CCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHEEEECCCCCCCC QVQLINTSRAFLRPGNGGAHQYFAVQSHNHGVNDPGHAHGGVQNGTASTGRSTSVDQPPA EEEEEECCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VFSFGNTWGATTGISIQYAGDEETRPRNFGVDYVMRIK EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA