Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yheS [H]
Identifier: 159184621
GI number: 159184621
Start: 1109342
End: 1111225
Strand: Reverse
Name: yheS [H]
Synonym: Atu1118
Alternate gene names: 159184621
Gene position: 1111225-1109342 (Counterclockwise)
Preceding gene: 159184622
Following gene: 159184619
Centisome position: 39.11
GC content: 61.68
Gene sequence:
>1884_bases ATGATTACGATTACCGATCTTTCCGCCCGCATCGCCGGGCGTCTGCTTCTTGACCATGCCAGCGTGGCGCTTCCCGCCGG TGTGAAGGCGGGTCTCGTCGGCCGCAACGGCGCCGGAAAATCCACCCTGTTCCGGATCATCACCGGCGATCTTGCGGCGG AAGGCGGTTCGGTGACGATCCCGAAACTCGCCCGCATCGGCCAGGTGGCACAGGAAGCGCCGGGCACGGAGGAATCACTG ATTTCCATCGTGCTTGCCGCCGACAAGGAGCGCAGCGCGCTTTTGGCCGAAGCGGAAACCGCAACCGATCCTCACCGGAT CGCTGAAATCCAGATGCGGCTTGTCGATATCGATGCCCATTCGGCGGAAGCGCGCGCCTCCAGCATTCTCGCCGGTCTCG GCTTCGATCACGAGGCGCAGCTTCGGCCCGCCTCCTCCTTCTCCGGCGGCTGGCGCATGCGCGTGGCGCTCGCCTCGGTG CTGTTTGCCGAACCGGACCTGTTGCTGCTCGACGAGCCGACCAACTATCTCGACCTCGAAGGCACGCTCTGGCTGGAAGA CTATATCCGGCGTTATCCGCATACCGTCATCATCATCAGCCATGACCGCGATCTTCTCAACAATGCCGTCAATTCCATCG TGCATCTGGACCAGAAGAAGCTGACCTTCTATCGCGGTGGTTACGACCAGTTCGAGCGGCAGAAGGCCGAGGCTGACGAA TTGCAGATGAAGGCCAAGGTCAAGAACGATGCTGCACGCAAACATCTGCAAAGCTTCATCGACCGTTTCCGCGCCAAGGC CACCAAGGCACGCCAGGCCCAGAGCCGCATCAAGGCGCTGGAGCGCATGGGCACCGTTGCCGCCGTGATCGAGGATCACG TCCAGCCGATCACGTTTCCCGAGCCGGAAAAGCAGCCCGCCTCCCCCATCGTCGCCATCAATGGCGGTGCCGTCGGTTAC GAGCCGGGCAAATCCATCCTGAAACAGCTTAATCTCAGGATCGACAATGACGACCGCATCGCGCTGCTCGGCTCGAACGG CAACGGCAAATCGACCTTCGCGAAATTCATCTCCGGCCGGCTTGCCCCGCAGGCGGGCGATCTTCGTGTGGCCTCGGGGC TCAAGATCGGTTTCTTCGCACAGCATCAGCTCGACGACCTCGTGCCGGATGAAACGCCCGTCGAACATGTGCGCAAGCTG ATGCCGCTCGCTCCTGAAGCGCAGGTTCGTGCTCGCGTGGCGCAGATGGGCCTTGCAACGGAAAAAATGTCGACGGCGGC GAAGGACTTGTCCGGTGGTGAAAAGGCCCGGCTGCTGATGGGGCTTGCCGCCTTCCATGCGCCGAACCTGCTGATCCTCG ACGAACCGACCAACCATCTCGACATCGACAGCCGCCGGGCGCTGATCGAGGCGCTGAACGATTATAGCGGCGCGGTCATC CTCATCTCGCACGACCGCCACCTGATCGAAGCGACGGTGGACCGGCTGTGGCTGGTAGCCGACGGCACGGTCAAGACCTT CGAAGGCGACATGGAGGAATATCGCGATCTCGTTATTTCGTCCGGCAGGAAGAAGGACGACAAGACCGAGGCCGCTGCCG ACCAGACCTCGAAAGCCGACCAGCGCAAGGCCAATGCAGAAAAGCGCGCCCAGCTGGCGCCGCTCAAGAAAAAGATCAAC GAAATCGAGTCCCTGACGGCAAAGCTTGAGAAACTGATTCAGGCGCTCGACAAGGAGTTGGCGGACCCTGCTTTGTACGA AAAAGCACCCGCCAAGGCCGCGCTGAAGGTGAAGGAGCGCGGCGAGGCCGCGAGCAAGCTTTCGGACGCCGAGGAGCAAT GGCTGATGCTTTCGAGCGAATACGAGGATGCCATGGCGCAGTGA
Upstream 100 bases:
>100_bases CAACAGCTATCTGGCACAGCTCGGCTCCTGAAGCGGCAATCTCTCGCGGTGTGGCGCAGAGGCTCTTGCCTTGGCCAGAC AGTTCGGCCAAAACGGCGCC
Downstream 100 bases:
>100_bases TGCGCGATAGTGCCGAGCGTCCGGCGGCCTCAAGCCGCCGGAGCGTATCTGACGGTGCTTATTTCGCGCCGATGGCGTTG AGACCTTCGCGGGCGCATTC
Product: ABC transporter, nucleotide binding/ATPase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTIPKLARIGQVAQEAPGTEESL ISIVLAADKERSALLAEAETATDPHRIAEIQMRLVDIDAHSAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASV LFAEPDLLLLDEPTNYLDLEGTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAEADE LQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPITFPEPEKQPASPIVAINGGAVGY EPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFISGRLAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKL MPLAPEAQVRARVAQMGLATEKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSGAVI LISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQTSKADQRKANAEKRAQLAPLKKKIN EIESLTAKLEKLIQALDKELADPALYEKAPAKAALKVKERGEAASKLSDAEEQWLMLSSEYEDAMAQ
Sequences:
>Translated_627_residues MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTIPKLARIGQVAQEAPGTEESL ISIVLAADKERSALLAEAETATDPHRIAEIQMRLVDIDAHSAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASV LFAEPDLLLLDEPTNYLDLEGTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAEADE LQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPITFPEPEKQPASPIVAINGGAVGY EPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFISGRLAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKL MPLAPEAQVRARVAQMGLATEKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSGAVI LISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQTSKADQRKANAEKRAQLAPLKKKIN EIESLTAKLEKLIQALDKELADPALYEKAPAKAALKVKERGEAASKLSDAEEQWLMLSSEYEDAMAQ >Mature_627_residues MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTIPKLARIGQVAQEAPGTEESL ISIVLAADKERSALLAEAETATDPHRIAEIQMRLVDIDAHSAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASV LFAEPDLLLLDEPTNYLDLEGTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAEADE LQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPITFPEPEKQPASPIVAINGGAVGY EPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFISGRLAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKL MPLAPEAQVRARVAQMGLATEKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSGAVI LISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQTSKADQRKANAEKRAQLAPLKKKIN EIESLTAKLEKLIQALDKELADPALYEKAPAKAALKVKERGEAASKLSDAEEQWLMLSSEYEDAMAQ
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=37.7570093457944, Blast_Score=367, Evalue=1e-101, Organism=Homo sapiens, GI27881506, Length=526, Percent_Identity=36.8821292775665, Blast_Score=340, Evalue=3e-93, Organism=Homo sapiens, GI10947137, Length=526, Percent_Identity=36.8821292775665, Blast_Score=340, Evalue=3e-93, Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=35.5432780847145, Blast_Score=299, Evalue=7e-81, Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=35.5432780847145, Blast_Score=298, Evalue=9e-81, Organism=Homo sapiens, GI105990541, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI21536376, Length=181, Percent_Identity=30.939226519337, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI116734710, Length=276, Percent_Identity=25.7246376811594, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI27881501, Length=273, Percent_Identity=24.5421245421245, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI30795238, Length=273, Percent_Identity=24.5421245421245, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1789751, Length=635, Percent_Identity=41.8897637795276, Blast_Score=490, Evalue=1e-139, Organism=Escherichia coli, GI1787041, Length=524, Percent_Identity=34.3511450381679, Blast_Score=315, Evalue=8e-87, Organism=Escherichia coli, GI1787182, Length=628, Percent_Identity=29.4585987261146, Blast_Score=241, Evalue=1e-64, Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=30.0952380952381, Blast_Score=197, Evalue=2e-51, Organism=Escherichia coli, GI48994943, Length=492, Percent_Identity=23.9837398373984, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=28.1914893617021, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1786319, Length=188, Percent_Identity=34.5744680851064, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1787370, Length=268, Percent_Identity=27.2388059701493, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=26.7281105990783, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081834, Length=189, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1788506, Length=230, Percent_Identity=23.9130434782609, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17553372, Length=536, Percent_Identity=38.4328358208955, Blast_Score=347, Evalue=9e-96, Organism=Caenorhabditis elegans, GI17559834, Length=553, Percent_Identity=36.7088607594937, Blast_Score=332, Evalue=4e-91, Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=34.6368715083799, Blast_Score=318, Evalue=4e-87, Organism=Caenorhabditis elegans, GI115533608, Length=227, Percent_Identity=31.2775330396476, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17565586, Length=244, Percent_Identity=26.6393442622951, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565938, Length=210, Percent_Identity=31.4285714285714, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=37.037037037037, Blast_Score=362, Evalue=1e-100, Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=33.7121212121212, Blast_Score=313, Evalue=4e-86, Organism=Saccharomyces cerevisiae, GI6325030, Length=390, Percent_Identity=30.5128205128205, Blast_Score=151, Evalue=4e-37, Organism=Saccharomyces cerevisiae, GI6323278, Length=403, Percent_Identity=25.8064516129032, Blast_Score=123, Evalue=8e-29, Organism=Saccharomyces cerevisiae, GI6324314, Length=402, Percent_Identity=25.8706467661692, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=40.3409090909091, Blast_Score=391, Evalue=1e-109, Organism=Drosophila melanogaster, GI24642252, Length=526, Percent_Identity=36.8821292775665, Blast_Score=344, Evalue=1e-94, Organism=Drosophila melanogaster, GI18859989, Length=526, Percent_Identity=36.8821292775665, Blast_Score=344, Evalue=1e-94, Organism=Drosophila melanogaster, GI24641342, Length=541, Percent_Identity=36.4140480591497, Blast_Score=340, Evalue=2e-93, Organism=Drosophila melanogaster, GI28574150, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI116007328, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI221500365, Length=175, Percent_Identity=30.8571428571429, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007184, Length=174, Percent_Identity=32.183908045977, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 68435; Mature: 68435
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTI CEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHEEHHHHCCCCCEEH PKLARIGQVAQEAPGTEESLISIVLAADKERSALLAEAETATDPHRIAEIQMRLVDIDAH HHHHHHHHHHHHCCCCHHHHEEEHEECCCCHHHHHHHCCCCCCHHHHHEEEEEEEEECCC SAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASVLFAEPDLLLLDEPTNYLDLE CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECC GTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAEADE CEEEHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHEEEEECCHHHHHHHHCCHHH LQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPITFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EPEKQPASPIVAINGGAVGYEPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFISGR CCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCEECCCCEEEEEECCCCCHHHHHHHHHCC LAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKLMPLAPEAQVRARVAQMGLAT CCCCCCCEEEECCCEEEEEEHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH EKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSGAVI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE LISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQTSKAD EEECCCHHHHHHHHHEEEEECCCEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRKANAEKRAQLAPLKKKINEIESLTAKLEKLIQALDKELADPALYEKAPAKAALKVKER HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH GEAASKLSDAEEQWLMLSSEYEDAMAQ CHHHHHHHCCHHHHEEHHCHHHHHHCC >Mature Secondary Structure MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTI CEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHEEHHHHCCCCCEEH PKLARIGQVAQEAPGTEESLISIVLAADKERSALLAEAETATDPHRIAEIQMRLVDIDAH HHHHHHHHHHHHCCCCHHHHEEEHEECCCCHHHHHHHCCCCCCHHHHHEEEEEEEEECCC SAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASVLFAEPDLLLLDEPTNYLDLE CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECC GTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAEADE CEEEHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHEEEEECCHHHHHHHHCCHHH LQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPITFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EPEKQPASPIVAINGGAVGYEPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFISGR CCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCEECCCCEEEEEECCCCCHHHHHHHHHCC LAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKLMPLAPEAQVRARVAQMGLAT CCCCCCCEEEECCCEEEEEEHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH EKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSGAVI HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE LISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQTSKAD EEECCCHHHHHHHHHEEEEECCCEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRKANAEKRAQLAPLKKKINEIESLTAKLEKLIQALDKELADPALYEKAPAKAALKVKER HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH GEAASKLSDAEEQWLMLSSEYEDAMAQ CHHHHHHHCCHHHHEEHHCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]