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The map label for this gene is yciR [C]

Identifier: 159184618

GI number: 159184618

Start: 1101977

End: 1103005

Strand: Direct

Name: yciR [C]

Synonym: Atu1112

Alternate gene names: 159184618

Gene position: 1101977-1103005 (Clockwise)

Preceding gene: 159184617

Following gene: 159184620

Centisome position: 38.78

GC content: 59.09

Gene sequence:

>1029_bases
ATGGGACAGGCGATTTCTAGACCGGATCGGGAGGTGGAGCGTCTTGTGGCCGTGCGGTCGGTTGTCGCCTTCAAGAATGC
CGAAACTGACGAATTGAGGGCAATCTCCCAGCTGGCACAGGGCGTATTCGACGTGGCGCGCGCGGCGGTTCACATTCTGG
ACGAGGACTGGCTGCATATCGCCGAGCAAGCGGGCCTGCAATTTCAGGAGTGCTCCCGGGATATCGCCATCTGCGACCGC
GTGGTCGTGACACAGAATGTTTTGACGGTGTCTGATCTGAGCGTCCACCCGGAATTCGGCTGGCTTCCCTATGTGAAAGG
TAGCCCTGAGTTGCGCTCTTATGCGGGCGCGCCGATCGAACTTGAGCCCGGTCTCGTTGTCGGCACCTTCTGCCTGCTCG
ACCCCAACGTGCGTGAATATTCACCGGCCGAGATCGACAATCTGAGATATTTCGCAACACTTGCCGGAGCGCTTCTGAGA
CTGCAAAAGGCCAATTTCACCATGAGCCTTGCCGCTCGTGAATTGCGCGACGCGGCCATGACCGATCCTCTCACGGGTTT
CTATAACCGCAAGGCTCTGGATGCCATCGTTGACCTAGAACTTGGCGCAGCGCTTTGCGAGAGGGAAACCTTTGGTGTTC
TTTATCTCGATCTCGACGGTTTCAAGGCCATCAACGATACGCTGGGTCATGCTGCAGGAGACAAGGTGCTTGTCGAGGCG
GCCGCACGCATTCGCGACGTTGTCAGAGCTGAAGATACGGTCGTCCGCATGGGTGGTGACGAATTCGCGATATTCGTTCC
GCGTCCGATGTCGGCGTCCGTCATTGGCAGTCTGGCGGAAAGGCTGCTTGAAGCGTTTCGGCAGCCGTTTCATGTGGAGG
GCGAAGACGTGCTTGCACGTCTCAGCATCGGCGGCGCAATTGCGCCGCAGGCCGGTGCCGATCGCCCGACACTGCTGCGC
AGCGTCGACGAAGCCCTCTATCAGGCCAAAAAATCAGGGCGCGACCGCTTTGTCAGCCGCGCCCTCTGA

Upstream 100 bases:

>100_bases
CATGTGGCGTCGCTTGCAACCTTTTGCTTTATGAAGTGCTTAAGTAATCGGCGGCGCAGGGCAAAAGCGTTTGCGGCGCG
GTAAAATAGAAGGATCTGGC

Downstream 100 bases:

>100_bases
GGCTTGTATGTCTGGAAGCGTTGAGGCTTCTCAGTCGTAGAACGAATCCACGAATTTATGGCGGCCGAGCAGGAAGGCAT
CGGCCACATGGGTCAGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MGQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHIAEQAGLQFQECSRDIAICDR
VVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIELEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLR
LQKANFTMSLAARELRDAAMTDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEA
AARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLARLSIGGAIAPQAGADRPTLLR
SVDEALYQAKKSGRDRFVSRAL

Sequences:

>Translated_342_residues
MGQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHIAEQAGLQFQECSRDIAICDR
VVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIELEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLR
LQKANFTMSLAARELRDAAMTDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEA
AARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLARLSIGGAIAPQAGADRPTLLR
SVDEALYQAKKSGRDRFVSRAL
>Mature_341_residues
GQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHIAEQAGLQFQECSRDIAICDRV
VVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIELEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLRL
QKANFTMSLAARELRDAAMTDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEAA
ARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLARLSIGGAIAPQAGADRPTLLRS
VDEALYQAKKSGRDRFVSRAL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=35.9281437125749, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788956, Length=182, Percent_Identity=36.8131868131868, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=37.5796178343949, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081977, Length=222, Percent_Identity=28.3783783783784, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=31.25, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=35.4285714285714, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=31.547619047619, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=28.75, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=32.0754716981132, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 37394; Mature: 37263

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQAGLQFQECSRDIAICDRVVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIE
HHHHCCCHHHHCCHHHHHHHHHHHHCEEEEECCEECCCCCCCCCCCCCCHHHHHCCCCEE
LEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLRLQKANFTMSLAARELRDAAM
ECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHH
AARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLAR
HHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LSIGGAIAPQAGADRPTLLRSVDEALYQAKKSGRDRFVSRAL
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
GQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHI
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQAGLQFQECSRDIAICDRVVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIE
HHHHCCCHHHHCCHHHHHHHHHHHHCEEEEECCEECCCCCCCCCCCCCCHHHHHCCCCEE
LEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLRLQKANFTMSLAARELRDAAM
ECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHH
AARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLAR
HHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LSIGGAIAPQAGADRPTLLRSVDEALYQAKKSGRDRFVSRAL
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]