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The map label for this gene is smpB

Identifier: 159184582

GI number: 159184582

Start: 1018677

End: 1019159

Strand: Direct

Name: smpB

Synonym: Atu1025

Alternate gene names: 159184582

Gene position: 1018677-1019159 (Clockwise)

Preceding gene: 15888366

Following gene: 159184583

Centisome position: 35.85

GC content: 59.21

Gene sequence:

>483_bases
ATGGCCCCCAAAGGCAGCCAGCGCGTGGTGAACAAGATCGTTGCGGAAAACCGCAAGGCTCGTTTCAACTATGAAATCAT
CGATACCTATGAGGCGGGGCTGGTGCTGACCGGCACCGAGGTCAAGTCGCTGCGCGAAGGCAAGGCGAATATCGCCGAAT
CCTATGCCTCGGACGAGGGCGATGAAATCTGGCTGATCAATTCCCACCTGCCGGAATATCTGCAGGCCAACCGCTTCAAC
CACGAGCCGCGCCGCCGCCGCAAGCTGCTGTTGAACAAGCGAGAGATCAACCGCCTGCGCGCCGGCATCAACCGCGACGG
CATGACGCTGGTGCCGCTGAAGGTCTACTTCAACGAGAAGGGTCGTGCGAAGCTGGAATTGGCGCTCGCCAAGGGCAAAA
AGCTGCATGACAAGCGCGAGACCGAGAAGGAACGCGACTGGAACCGACAGAAGTCGCGGCTGTTGAAGGGTAATTCGCAG
TAG

Upstream 100 bases:

>100_bases
GCCTTTTCTTTTTGCGGCGACAACATTAAATAGATGTTCGAAAACCGCTTTCGGCGGCAAGGCCGAAGGTGCAATAAGAA
AAACAAGGGATTGAAATATC

Downstream 100 bases:

>100_bases
TTTCTGCCGGGTAGGGGTACTGCGGTTTTTCCCTGCATAGTCCCTTCGGCCCAAGGAGTTGGGCTTGAACTGGACATCAA
AAAATGCGGCGTTTTTTGAT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEGDEIWLINSHLPEYLQANRFN
HEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEKGRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNSQ

Sequences:

>Translated_160_residues
MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEGDEIWLINSHLPEYLQANRFN
HEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEKGRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNSQ
>Mature_159_residues
APKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEGDEIWLINSHLPEYLQANRFNH
EPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEKGRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNSQ

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=157, Percent_Identity=41.4012738853503, Blast_Score=117, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_AGRT5 (Q8UGL2)

Other databases:

- EMBL:   AE007869
- PIR:   AH2702
- PIR:   H97484
- RefSeq:   NP_354048.2
- ProteinModelPortal:   Q8UGL2
- SMR:   Q8UGL2
- STRING:   Q8UGL2
- GeneID:   1133063
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1025
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q8UGL2
- ProtClustDB:   PRK05422
- BioCyc:   ATUM176299-1:ATU1025-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18628; Mature: 18496

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEG
CCCCCHHHHHHHHHHCCCCCEECEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEK
CEEEEECCCCHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEEECCC
GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNSQ
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
APKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEG
CCCCHHHHHHHHHHCCCCCEECEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEK
CEEEEECCCCHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEEECCC
GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNSQ
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194