Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184575
Identifier: 159184575
GI number: 159184575
Start: 1004028
End: 1004624
Strand: Reverse
Name: 159184575
Synonym: Atu1008
Alternate gene names: NA
Gene position: 1004624-1004028 (Counterclockwise)
Preceding gene: 159184576
Following gene: 159184573
Centisome position: 35.35
GC content: 61.31
Gene sequence:
>597_bases ATGCCCCCTAGCCTTTCGACGATCCTGATCGCCGGCACATCACATGTGGGCAAAAGCACTCTTGCCGGCCTGTTGAGCAC AAGGCTCGGCTGGCAGGCGATATCCACCGACAGTCTCGCCCGCCACCCCGGCAGGCCGTGGCCAGGCATTCCGGCACCGG TGGAGGAATATTATACGGCTCTCTCGACCGAGACGATCCACTGGTTTCTGAAGGTGCATCACCAGAACATCTGGCCACTG ATCCGCCCGATGATCGACAGCAGTTCCCATACCGGTAATCCCGCAATCTTCGAGGGTGCGGCCCTGCGCCCGGAATTCAT ATCGCCCCTGCTCGGCAGCACGGTTGCCGGCGTCCTGCTTCATGCCGGGAATGATTTCCTTCTCGAAAGAATGCGCTCCC ACGCCCGATATGAGGATGCAACGGCCGGCCAGCGGCGCATCATGGACGCCTTCATCGAGCGTTCGCTGCGGGAAAATACC GAAATGCTGGCATCGGCGCGCGAACACCACCTGCCGATTGTCGATGTGACCAGCCCGGAAGCATTGAAAACCCTCGTGGC CGATCTCGCAGCGCGGGCAAAGGCTGCTCCTGCCTGA
Upstream 100 bases:
>100_bases CGCCAGCACGGCGTCATGCGACCTGGACAGAGATCGCGCGTGGAACACACAGGCCCGTTGATGTATCGTTGCTTCGAGCC GAATATCAATGAGAACGACG
Downstream 100 bases:
>100_bases AGAAAATCGCGGGATCTGTGATGCGCCCTGCGCCATTGCGGCATCAAGCCGCCATGTCACCACCTGTTAACATCCCTGAA CACCATATGAACCGGGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MPPSLSTILIAGTSHVGKSTLAGLLSTRLGWQAISTDSLARHPGRPWPGIPAPVEEYYTALSTETIHWFLKVHHQNIWPL IRPMIDSSSHTGNPAIFEGAALRPEFISPLLGSTVAGVLLHAGNDFLLERMRSHARYEDATAGQRRIMDAFIERSLRENT EMLASAREHHLPIVDVTSPEALKTLVADLAARAKAAPA
Sequences:
>Translated_198_residues MPPSLSTILIAGTSHVGKSTLAGLLSTRLGWQAISTDSLARHPGRPWPGIPAPVEEYYTALSTETIHWFLKVHHQNIWPL IRPMIDSSSHTGNPAIFEGAALRPEFISPLLGSTVAGVLLHAGNDFLLERMRSHARYEDATAGQRRIMDAFIERSLRENT EMLASAREHHLPIVDVTSPEALKTLVADLAARAKAAPA >Mature_197_residues PPSLSTILIAGTSHVGKSTLAGLLSTRLGWQAISTDSLARHPGRPWPGIPAPVEEYYTALSTETIHWFLKVHHQNIWPLI RPMIDSSSHTGNPAIFEGAALRPEFISPLLGSTVAGVLLHAGNDFLLERMRSHARYEDATAGQRRIMDAFIERSLRENTE MLASAREHHLPIVDVTSPEALKTLVADLAARAKAAPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21592; Mature: 21461
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPSLSTILIAGTSHVGKSTLAGLLSTRLGWQAISTDSLARHPGRPWPGIPAPVEEYYTA CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHH LSTETIHWFLKVHHQNIWPLIRPMIDSSSHTGNPAIFEGAALRPEFISPLLGSTVAGVLL HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHH HAGNDFLLERMRSHARYEDATAGQRRIMDAFIERSLRENTEMLASAREHHLPIVDVTSPE HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHH ALKTLVADLAARAKAAPA HHHHHHHHHHHHHCCCCC >Mature Secondary Structure PPSLSTILIAGTSHVGKSTLAGLLSTRLGWQAISTDSLARHPGRPWPGIPAPVEEYYTA CCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHH LSTETIHWFLKVHHQNIWPLIRPMIDSSSHTGNPAIFEGAALRPEFISPLLGSTVAGVLL HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHH HAGNDFLLERMRSHARYEDATAGQRRIMDAFIERSLRENTEMLASAREHHLPIVDVTSPE HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHH ALKTLVADLAARAKAAPA HHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA