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The map label for this gene is ydiU [C]

Identifier: 159184545

GI number: 159184545

Start: 933626

End: 935086

Strand: Direct

Name: ydiU [C]

Synonym: Atu0945

Alternate gene names: 159184545

Gene position: 933626-935086 (Clockwise)

Preceding gene: 159184543

Following gene: 159184546

Centisome position: 32.86

GC content: 61.46

Gene sequence:

>1461_bases
ATGAAATTCGACAATTCCTATGCCCACCTGCCGGAGCGGTTCAGCGCCGCCGTGCTGCCCACGCCGGTGAAGGCGCCGCG
CCTCATCGCCTTTAATCGTACGCTGGCGGAGGAGCTTCTTCTTGACGTTGCGGACCTCGACGATGACAGGCTGGCGGCGA
TCTTTTCCGGCAATGTCGTGCCTCAGGGGGCCGAGCCGCTGGCCATGGCCTATGCGGGCCACCAGTTCGGTGGTTTCGTG
CCGCAGCTTGGCGATGGCCGCGCCATTCTTCTCGGCGAAGTAATCGACGTAAACGGCAGAAGGCGGGATATCCAGCTCAA
GGGTTCCGGCCCCACGCCGTTTTCGCGCCGGGGAGACGGGCGCGCAGCGCTCGGCCCGGTGCTGCGCGAATATATCGTTT
CGGAAGCCATGTTTGCGCTCGGCATACCCGCCACAAGGGCGCTGGCGGCCGTCCTTAGCGGCGACAGGGTGCAGCGTGAA
GTAGGCCTGCCGGGCGGTGTCTTCACCCGTGTCGCGGCAAGCCATATCCGTGTCGGCACCTTCCAGTTCTTCGCCGCGCG
CGAAGATGACGAGGCAATCAGGAGCCTCGCGGACTATGTCATCGACCGCCACTATCCAGACGCGAAAAACACCGAAAATC
CCTATCTCGCTTTGCTTCGTGGCATTGCTGAAAGGCAGTGCGCGCTTATCGCCCGCTGGATGATGGTGGGTTTTATCCAC
GGCGTGATGAACACCGACAATATGGCGGTTTCCGGCGAGACCATCGATTTCGGCCCCTGCGCCTTTCTCGATGAATACCA
TCCGAACAAGGTGTTTTCCTCCATCGATGCGCAGGGCCGTTACGCCTACAACAACCAGCCCGGCATTGCGCAATGGAACA
TAGCGAGGTTGGCGGAATGCCTGCTGCCGCTGCTCGATCCTGAGGTGGAGAAAGCAGCCGAACTCGCCAACGCCGTACTG
GCCGATTTCGCCGCCGCCTTTCCCCAACGCTGGCTCACTGGCATGCGCGAAAAGCTCGGCCTGACCACCGAGGAGGAGGG
CGACATGGATCTGATCCAGTCGCTTCTTTCACTGATGCAGGCATCGGAAGCCGATTTTACACTGACCTTCCGGCGTCTTT
CCCATGCGGCCAATGGCGATGCCGAGCCGTTCCGCGGCATGTTCATCGATATTGCCGGGGCGGACGCGTTTCTGACCCGC
TGGCGGGAACGGGCTGGAAGGGAAGGTATTTCCGACTCCGAGAGGTCAGCCGCGATGCTGTCGATCAATCCGGCCATCAT
TCCGCGCAACCACCGCATCGAAGAACTGATCGAGGCGGCGGTGGAGGATGGCGATTTCGAGCCCTTCCACGCCATGCTGA
CGGCCATCGCAACGCCCTTCGAGGAACGGCCGGACAATTTCGTCTATATGCAGCCGCCGATGAGCCATGAGCGGGTGTTC
AGGACGTTTTGCGGGACTTGA

Upstream 100 bases:

>100_bases
CGCCATGCTCCCGCATCGCCGTTTCGTATTTACCGCTGACACCTCTCGCAACTGGACGTAAAAACCGCCATATCAGGCAA
AAGCAGGGAGTTTACCCGTG

Downstream 100 bases:

>100_bases
GCATCCGCCCGGGCCGTCTTGCCGGACCTTATCCGGCATCCAGCCGACGCGCGTCCGCGCGGCGAGAGCACTCTCTCCAG
CCCAAGGGCTTGGGCTGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKFDNSYAHLPERFSAAVLPTPVKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVVPQGAEPLAMAYAGHQFGGFV
PQLGDGRAILLGEVIDVNGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMFALGIPATRALAAVLSGDRVQRE
VGLPGGVFTRVAASHIRVGTFQFFAAREDDEAIRSLADYVIDRHYPDAKNTENPYLALLRGIAERQCALIARWMMVGFIH
GVMNTDNMAVSGETIDFGPCAFLDEYHPNKVFSSIDAQGRYAYNNQPGIAQWNIARLAECLLPLLDPEVEKAAELANAVL
ADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTR
WRERAGREGISDSERSAAMLSINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPPMSHERVF
RTFCGT

Sequences:

>Translated_486_residues
MKFDNSYAHLPERFSAAVLPTPVKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVVPQGAEPLAMAYAGHQFGGFV
PQLGDGRAILLGEVIDVNGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMFALGIPATRALAAVLSGDRVQRE
VGLPGGVFTRVAASHIRVGTFQFFAAREDDEAIRSLADYVIDRHYPDAKNTENPYLALLRGIAERQCALIARWMMVGFIH
GVMNTDNMAVSGETIDFGPCAFLDEYHPNKVFSSIDAQGRYAYNNQPGIAQWNIARLAECLLPLLDPEVEKAAELANAVL
ADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTR
WRERAGREGISDSERSAAMLSINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPPMSHERVF
RTFCGT
>Mature_486_residues
MKFDNSYAHLPERFSAAVLPTPVKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVVPQGAEPLAMAYAGHQFGGFV
PQLGDGRAILLGEVIDVNGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMFALGIPATRALAAVLSGDRVQRE
VGLPGGVFTRVAASHIRVGTFQFFAAREDDEAIRSLADYVIDRHYPDAKNTENPYLALLRGIAERQCALIARWMMVGFIH
GVMNTDNMAVSGETIDFGPCAFLDEYHPNKVFSSIDAQGRYAYNNQPGIAQWNIARLAECLLPLLDPEVEKAAELANAVL
ADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTR
WRERAGREGISDSERSAAMLSINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPPMSHERVF
RTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=384, Percent_Identity=43.4895833333333, Blast_Score=275, Evalue=6e-74,
Organism=Escherichia coli, GI1787999, Length=468, Percent_Identity=42.5213675213675, Blast_Score=358, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6325034, Length=443, Percent_Identity=29.3453724604966, Blast_Score=191, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y945_AGRT5 (Q8UGU0)

Other databases:

- EMBL:   AE007869
- PIR:   AI2692
- PIR:   E97474
- RefSeq:   NP_353965.2
- STRING:   Q8UGU0
- GeneID:   1132983
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0945
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q8UGU0
- ProtClustDB:   PRK00029
- BioCyc:   ATUM176299-1:ATU0945-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53533; Mature: 53533

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDNSYAHLPERFSAAVLPTPVKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVV
CCCCCCHHHCHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
PQGAEPLAMAYAGHQFGGFVPQLGDGRAILLGEVIDVNGRRRDIQLKGSGPTPFSRRGDG
CCCCCCHHHHHCCCHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCC
RAALGPVLREYIVSEAMFALGIPATRALAAVLSGDRVQREVGLPGGVFTRVAASHIRVGT
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHEECE
FQFFAAREDDEAIRSLADYVIDRHYPDAKNTENPYLALLRGIAERQCALIARWMMVGFIH
EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMAVSGETIDFGPCAFLDEYHPNKVFSSIDAQGRYAYNNQPGIAQWNIARLAEC
HHCCCCCEEECCCCCCCCCCHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
LLPLLDPEVEKAAELANAVLADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTRWRERAGREGISDSERSAAML
CCCCCCEEHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEE
SINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPPMSHERVF
EECCEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHH
RTFCGT
HHHCCC
>Mature Secondary Structure
MKFDNSYAHLPERFSAAVLPTPVKAPRLIAFNRTLAEELLLDVADLDDDRLAAIFSGNVV
CCCCCCHHHCHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
PQGAEPLAMAYAGHQFGGFVPQLGDGRAILLGEVIDVNGRRRDIQLKGSGPTPFSRRGDG
CCCCCCHHHHHCCCHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCC
RAALGPVLREYIVSEAMFALGIPATRALAAVLSGDRVQREVGLPGGVFTRVAASHIRVGT
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHEECE
FQFFAAREDDEAIRSLADYVIDRHYPDAKNTENPYLALLRGIAERQCALIARWMMVGFIH
EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMAVSGETIDFGPCAFLDEYHPNKVFSSIDAQGRYAYNNQPGIAQWNIARLAEC
HHCCCCCEEECCCCCCCCCCHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
LLPLLDPEVEKAAELANAVLADFAAAFPQRWLTGMREKLGLTTEEEGDMDLIQSLLSLMQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ASEADFTLTFRRLSHAANGDAEPFRGMFIDIAGADAFLTRWRERAGREGISDSERSAAML
CCCCCCEEHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEE
SINPAIIPRNHRIEELIEAAVEDGDFEPFHAMLTAIATPFEERPDNFVYMQPPMSHERVF
EECCEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHH
RTFCGT
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194