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The map label for this gene is agmR [H]

Identifier: 159184332

GI number: 159184332

Start: 473010

End: 473660

Strand: Reverse

Name: agmR [H]

Synonym: Atu0484

Alternate gene names: 159184332

Gene position: 473660-473010 (Counterclockwise)

Preceding gene: 15887834

Following gene: 15887830

Centisome position: 16.67

GC content: 58.37

Gene sequence:

>651_bases
ATGTCGGAACTTGTCATTATCATTGCAGATGACCACCCGCTTTTTCGCGGTGCCCTGAAACAGGCCGTAGCCGGTCTCGA
CGGGCAACAGACCATCATCGAGGCCGGGGATTTCGAGGCTGCCCGACATGCAGCCACAACGCGCAACGATGCCGATCTCA
TGCTTCTCGATCTCGCCATGCCGGGGGTCAGCGGATTTTCCGGCCTGATGGCGCTGAGAGCGGAATTTTCCAGCCTGCCG
ATCGTCATCGTTTCGGCAACGGATGATGCGACCACCGTTCGCCGGTCGATTGAACTCGGTGCTTCCGGTTTCATTTCCAA
ATCCTCTGGTATTGACGATATCAGGGACGGCATCCGCGCGGTTCTGGAAGGCGATGTCTGGATACCGTCGGGCCATCAGG
GTGAGAAGGAGCAGGATCCTGACGTGGCCGATCTGATCGGCCGGCTCAGAACGCTGACGCCACAGCAAAGCCGGGTTCTG
GGCATGCTGGCCGAAGGGCTGCTGAACAAGCAGATCGCCTATGAGCTCAATGTTTCCGAAGCCACCATCAAGGCGCATGT
CTCGGCAATTCTGCTGAAGCTCAAGGTCGACAGCCGCACACAGGCGGTCATCCAGCTCGCCAAGATAAACACATCGGCAA
TGGTGGCCTAG

Upstream 100 bases:

>100_bases
CAACCTTTGGCGGAGGAGCCGGGCGTGTTTCGACCACCGGCAAAGGGAGTAAGCCAATAGCTGCGAAAGAACCGCATAAC
GCCCTTGGGAGGGGGCCAGA

Downstream 100 bases:

>100_bases
AGCAAGGATTTTATTCCTTTCCTTTCTTTACTCCTGACCGGATTTGGTCTAGATTCCGGTCAGTAAACGACAGGAGCTTT
CCGCTATCGGCTCCACTTGC

Product: two component response regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGDFEAARHAATTRNDADLMLLDLAMPGVSGFSGLMALRAEFSSLP
IVIVSATDDATTVRRSIELGASGFISKSSGIDDIRDGIRAVLEGDVWIPSGHQGEKEQDPDVADLIGRLRTLTPQQSRVL
GMLAEGLLNKQIAYELNVSEATIKAHVSAILLKLKVDSRTQAVIQLAKINTSAMVA

Sequences:

>Translated_216_residues
MSELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGDFEAARHAATTRNDADLMLLDLAMPGVSGFSGLMALRAEFSSLP
IVIVSATDDATTVRRSIELGASGFISKSSGIDDIRDGIRAVLEGDVWIPSGHQGEKEQDPDVADLIGRLRTLTPQQSRVL
GMLAEGLLNKQIAYELNVSEATIKAHVSAILLKLKVDSRTQAVIQLAKINTSAMVA
>Mature_215_residues
SELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGDFEAARHAATTRNDADLMLLDLAMPGVSGFSGLMALRAEFSSLPI
VIVSATDDATTVRRSIELGASGFISKSSGIDDIRDGIRAVLEGDVWIPSGHQGEKEQDPDVADLIGRLRTLTPQQSRVLG
MLAEGLLNKQIAYELNVSEATIKAHVSAILLKLKVDSRTQAVIQLAKINTSAMVA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=36.231884057971, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786747, Length=198, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=28.9340101522843, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788546, Length=224, Percent_Identity=24.1071428571429, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=22.680412371134, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=25.8883248730964, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1789937, Length=154, Percent_Identity=25.3246753246753, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22984; Mature: 22852

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGDFEAARHAATTRNDADLMLLDLAM
CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCEEEEEEEC
PGVSGFSGLMALRAEFSSLPIVIVSATDDATTVRRSIELGASGFISKSSGIDDIRDGIRA
CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VLEGDVWIPSGHQGEKEQDPDVADLIGRLRTLTPQQSRVLGMLAEGLLNKQIAYELNVSE
HHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCH
ATIKAHVSAILLKLKVDSRTQAVIQLAKINTSAMVA
HHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGDFEAARHAATTRNDADLMLLDLAM
CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCEEEEEEEC
PGVSGFSGLMALRAEFSSLPIVIVSATDDATTVRRSIELGASGFISKSSGIDDIRDGIRA
CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VLEGDVWIPSGHQGEKEQDPDVADLIGRLRTLTPQQSRVLGMLAEGLLNKQIAYELNVSE
HHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCH
ATIKAHVSAILLKLKVDSRTQAVIQLAKINTSAMVA
HHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]