Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887834
Identifier: 15887834
GI number: 15887834
Start: 475394
End: 475891
Strand: Reverse
Name: 15887834
Synonym: Atu8129
Alternate gene names: NA
Gene position: 475891-475394 (Counterclockwise)
Preceding gene: 159184335
Following gene: 159184332
Centisome position: 16.75
GC content: 62.85
Gene sequence:
>498_bases ATGACCGATACATCACTTCAGACGCTCACCCGGCGCGGCTTCGTGCTTATTTCCGCCGGCTCCGTTCTTTCCGCCTGCGT TTCCATGCCGACCAACAAGGGTCTGCCTTCGGGCACCCGCGATGAGACGGCAGCGGCACTGCCGATGGTCAATGATCTGC GCCGTTCGAAGGGGCTTGCGCCACTCGCCATCAATGGGGCGGCCAGCGGTGCCGCTGCCTATCAGGCCGGCCGCATGGTC AAGGCGCAGAAGATGGCGCATCTGATCGGCCTGACAGACAGTTTCCTCATCCGCATGAAGGACGGCAAGGTGCCGCTTCC GGCAGCGGAAAACGTGGCAGCCGGACAGGACAGCGTGGAACGGGTGGTCAAGGCCTGGATCGGCTCGCAACACCATCTCG AAAACATGCTCGGGCCTTATAATGGTCTCGGCGTCGCGGTTGCCTATGATGCCGCCAGCCGCAACCGGCCCTATTGGGCG ATGGTGCTTTGCGCCTGA
Upstream 100 bases:
>100_bases TTCCATGCGCTGGGCGCGATCGGCGACTATCTGCTCCTCGGGGCCACGATCGTCATTCCCGTTTTCATCATCCTGCGCCT TCTGAGCTACCGCCGCTGAC
Downstream 100 bases:
>100_bases ATTCAGGGGCGGGAGATCACCCCGCTCCTTCGCTCTTCAGCCGAGCTTACGGTCAGCCCAGCGGTCGACCGCGCTGTCGC GCAGGTCACGGATGGTCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MTDTSLQTLTRRGFVLISAGSVLSACVSMPTNKGLPSGTRDETAAALPMVNDLRRSKGLAPLAINGAASGAAAYQAGRMV KAQKMAHLIGLTDSFLIRMKDGKVPLPAAENVAAGQDSVERVVKAWIGSQHHLENMLGPYNGLGVAVAYDAASRNRPYWA MVLCA
Sequences:
>Translated_165_residues MTDTSLQTLTRRGFVLISAGSVLSACVSMPTNKGLPSGTRDETAAALPMVNDLRRSKGLAPLAINGAASGAAAYQAGRMV KAQKMAHLIGLTDSFLIRMKDGKVPLPAAENVAAGQDSVERVVKAWIGSQHHLENMLGPYNGLGVAVAYDAASRNRPYWA MVLCA >Mature_164_residues TDTSLQTLTRRGFVLISAGSVLSACVSMPTNKGLPSGTRDETAAALPMVNDLRRSKGLAPLAINGAASGAAAYQAGRMVK AQKMAHLIGLTDSFLIRMKDGKVPLPAAENVAAGQDSVERVVKAWIGSQHHLENMLGPYNGLGVAVAYDAASRNRPYWAM VLCA
Specific function: Unknown
COG id: COG2340
COG function: function code S; Uncharacterized protein with SCP/PR1 domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17338; Mature: 17207
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTSLQTLTRRGFVLISAGSVLSACVSMPTNKGLPSGTRDETAAALPMVNDLRRSKGLA CCCCHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC PLAINGAASGAAAYQAGRMVKAQKMAHLIGLTDSFLIRMKDGKVPLPAAENVAAGQDSVE CEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH RVVKAWIGSQHHLENMLGPYNGLGVAVAYDAASRNRPYWAMVLCA HHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEC >Mature Secondary Structure TDTSLQTLTRRGFVLISAGSVLSACVSMPTNKGLPSGTRDETAAALPMVNDLRRSKGLA CCCHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC PLAINGAASGAAAYQAGRMVKAQKMAHLIGLTDSFLIRMKDGKVPLPAAENVAAGQDSVE CEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH RVVKAWIGSQHHLENMLGPYNGLGVAVAYDAASRNRPYWAMVLCA HHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA