Click here to switch to the map view.

The map label for this gene is ybbB [H]

Identifier: 159184299

GI number: 159184299

Start: 408723

End: 409586

Strand: Direct

Name: ybbB [H]

Synonym: Atu0410

Alternate gene names: 159184299

Gene position: 408723-409586 (Clockwise)

Preceding gene: 159184298

Following gene: 159185423

Centisome position: 14.38

GC content: 60.65

Gene sequence:

>864_bases
ATGGAAAATGAGATCGAGGGTTTCGCCGTTATCGGCGGCCCGCGCTCACGGGTGTGGAACGGCATCGTTGCCGATCTCTG
GGATGTGCGTTGCGCGCCGAAGGCGGGCGGCCGTTATGTCGGCAAGGATCCACGGTTCGTTTTCCTGCTGGACATGGAGG
GGACGGATGACGGCCGTTTCATGATGAACCGCTGCCGCCGCGACACTTGCGGCTCGTCCAGGGCGAACCGGATTTCCTTC
GTGCCCGCCGATATCGATGTACATGCCGAACTCAGCAATGTCTCCTTCGTGCGCCATCTGGATCTGCATTTCGATGCGGG
GTTGCTGGGTGCGCGGCTGGTGCAGGGCTTCGATCCGCACGCGCTTCTCGATCCGCATCTGATGTTCGAGGATGAACGGC
TGCTGGCGCTCGCGCGGCTGATCGCCGCGGAATGCGATAATCCGGATCCGCTGCATGACCTCTACGGCGAAAGCCTCGTC
CTGGCACTCTTGACGGACTTCCTCAAGGTGAAACGGGAACCGGTCAGGAAACGCAGCAAGCTTGCCGCCTGGCAATTGCG
GGCGGCGACCGATTATATCCGTGAACATTGCCTGCGGTCGATCCGGCTGGAGGAACTGGCGGAACTCACTAACCTGTCGC
AATCCCATTTCAGCCACGCCTTCAAGGCGTCAACCGGTGTGCCGCCGCACCAATGGCAGATGCAGGCACGCATCGATCGC
GTCAAGGAACTGATGATGCGGCCAGACATGGCGCTGACCGATATCGCCATCGCCGCCGGTTTTTCAGATCAGGCGCATTT
TTCCCGCGTCTTCCGCAAGATGGTCGGCGTTTCCCCGTCCGTCTGGCAAAAAAACCGCCAATAG

Upstream 100 bases:

>100_bases
GAAATATAGTTTGCCACTATAAACATGAATAGATTTATCATGTTTATAGTGGCGCCATGGCGCTTTGCGGGATCGAGAGG
CCATGGCTTTCCGCGTTCGG

Downstream 100 bases:

>100_bases
GCACGGTTTCGTTCCATCCTGCTTTAAAAAAATTCCGGTCACGGAGCCGGAAATCCTTCGGAACGATTTGCTGGGTGCCG
GGGTTTACCAGACGTGACAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRFMMNRCRRDTCGSSRANRISF
VPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPHALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLV
LALLTDFLKVKREPVRKRSKLAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ

Sequences:

>Translated_287_residues
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRFMMNRCRRDTCGSSRANRISF
VPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPHALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLV
LALLTDFLKVKREPVRKRSKLAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ
>Mature_287_residues
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRFMMNRCRRDTCGSSRANRISF
VPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPHALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLV
LALLTDFLKVKREPVRKRSKLAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=128, Percent_Identity=32.03125, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32547; Mature: 32547

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRF
CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHH
MMNRCRRDTCGSSRANRISFVPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPH
HHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCC
ALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLVLALLTDFLKVKREPVRKRSK
CCCCCHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRF
CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHH
MMNRCRRDTCGSSRANRISFVPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPH
HHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCC
ALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLVLALLTDFLKVKREPVRKRSK
CCCCCHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]