Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is fct [H]
Identifier: 159184298
GI number: 159184298
Start: 406406
End: 408595
Strand: Direct
Name: fct [H]
Synonym: Atu0409
Alternate gene names: 159184298
Gene position: 406406-408595 (Clockwise)
Preceding gene: 15887757
Following gene: 159184299
Centisome position: 14.3
GC content: 59.0
Gene sequence:
>2190_bases TTGAAAAATTTGCATGGGATGTTTTTGAGTCGTCTGGCTTTGGGAACGGCTGCCGTTGTTCTGATGGGGCCTGTGATGGG CCACGCACAGGAAACGACCGTCCTGAAGCAGATTACCGTTGAAGGACAGGGCGCGGAAAACGCGACGGGACCGGTTCGGG GGTATGTCGCGAAGAAAAGCGCGACGGGTTCGAAAACCGAGACGGAAACGAAAGCCATTCCCCAGTCCGTATCGGTCGTC GGCCGTCAGGAAATGGACGACCGCGGTGCGGTGACCAAAATCGACGAGGTGTTGCGTTATACGCCCGGCGTGACGGCGGA ACCCTTCGGCACAGACCCTGACACGGACTGGTTTTACATCCGTGGTTTCCAGGCCACCCAGACCGGCGTGTTCCTGGATG GGCTGAACCTGTTCAGCTACGGTTTCGGCGGTTTCCAGATGGATGCCTACGGTCTGGAGCGGGTGGAGGTTCTCAAAGGC CCCGCCTCGGTGCTCTATGGCGGTGCCAATCCGGGTGGCATCGTGCAGATGGTCAGCAAGCGCGCGCAGGATACCCCGGT CCGCGAAACGGAAATCGGCATCAACAATTTCGGCAATGCGTTCTTCGGTTTCGATCTCGGCGACAAGGTCGACGCCGAGG GCGTGTGGAAATATCGCGTCACCGGCAAGGTCTCGGGCGGCGATAATTACACTGACTATTCCGAGGATCTGCGCGGTTTC ATCATGCCGCAGATCACCTTCGAGCCCGATGCCCAGACGAGCGCCACGCTCTACGGTTATTTCTCGGCACTCGATCAGGT CCATGTTGGCAACGGTTTCCTGCCCTATGTCGGCACCGTGGTCGACGCACCGTTCGGCAAGCTTGATCGCAAGGCCTTTT ATGGCGAACCGGACATTGATAATGGCCGTGTCTATCAGTCGATGGTGGGCTACGACGTCAGCCACGAATTCGACAATGGC TGGAAGATCAGCCAGAATGCCCGTTACGGCCATCTCTACAAGCACGAGACTGGGCCCTATCCGGGCGGCTGGGCCAATGC CGATGCCAACGGCCAGCCGATCCTCGATCCGATCACCAACGACTATATGCTGACCCGCTTCGGTTATGACGGTTTGTCGA AGGTGGACAGCTTCGGCGTCGACAACCGCATCGAAGGCCAGTTCGATACCGGCGCGGTCAACCATTCGCCGCTGTTCGGC CTCGATTATAAATATTACCGGCTGGATCAGGTGCAGGCCTGCTGCGGATCGAATGCGATCGGCGCGCTGAAGCCGGTCTA TGGCTCGACGCAGGGAACGAACTTCGTTTATGCCGACAATATCGTCACCCAGCAGCAGATCGGCATCTATGCCCAGGATC AGCTGCGGTTTGGCGATGGCTGGCTGGTCACGCTGAATGGGCGTTATGACTATGTCGATACGGAGCTGAACAACCGGCTG CCGGCGGGCGTCTCGCGCCGCTCCAATGATGACGCGCTGAGCGGCCGCGCCGGTCTGGCCTATGAGTTCGACAATGGCCT GACCCCTTATGTTTCGGCCGCCACCTTCTTCAATCCGCTTATTGATACGCTTGCCGACGGCACCCCGGCTTCCCCGGAGG AAGGACACCAGTTCGAGGCGGGCATCAAATACGAGCCGAGCTTCTTCGACGGCAGCATCACGGCTTCCGTCTTCAAGCTG GTCAAGGACAATGCCATCGTTTCCTATACGGCGGGCGGCGTGACCACGAGTGGTCAGTTCGGGCAGGTGGAATCCACCGG CTTCGAGCTGGAAGCCAAGGCCAATCTCGACGAGAACTGGAAGGCGCTCGCCTCCTATTCCTATACTGATCTCGATATCA CGAAGGATGCCAATCCCAACCTGATCGGCAAATCGCCGTGGATCGTGCCCGCTCACACCGCGTCGCTATGGGTAGACTAC GCCTTCACCGATGAGACGTTTGAAGGCCTCAGCATTGGCGGCGGCGTGCGTTATCAGGGCAAGTCCTGGGCGGATGCGGC AAACACGCTGCGTGTTTCAGACGCTGCGGTCTTCGATGCCGCGATCCGCTATGAGAAGAACGACTGGACGGCCTCAGTCA ACGTCGCGAATGTCTTCGACAAGGAATATGTCAAGAGCTGCGCCGGGGTCTCCGTCTGCGGCTGGGGCGATAGTCGCACC ATCACCCTCAAGCTTTCCAAGAAGTGGTGA
Upstream 100 bases:
>100_bases CAAGCATCCTGTCTTAATCCTGATGTAAACACTCATCTTAATTGAGGTGCTGCGGCCTGTCGGATATGAACATCAGCCGC TATCTGTTTCGGGGCATATT
Downstream 100 bases:
>100_bases CACCGGGCCTATGGCCGGCAGTTGCGGGAAATATAGTTTGCCACTATAAACATGAATAGATTTATCATGTTTATAGTGGC GCCATGGCGCTTTGCGGGAT
Product: ferrichrome receptor precursor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MKNLHGMFLSRLALGTAAVVLMGPVMGHAQETTVLKQITVEGQGAENATGPVRGYVAKKSATGSKTETETKAIPQSVSVV GRQEMDDRGAVTKIDEVLRYTPGVTAEPFGTDPDTDWFYIRGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKG PASVLYGGANPGGIVQMVSKRAQDTPVRETEIGINNFGNAFFGFDLGDKVDAEGVWKYRVTGKVSGGDNYTDYSEDLRGF IMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPYVGTVVDAPFGKLDRKAFYGEPDIDNGRVYQSMVGYDVSHEFDNG WKISQNARYGHLYKHETGPYPGGWANADANGQPILDPITNDYMLTRFGYDGLSKVDSFGVDNRIEGQFDTGAVNHSPLFG LDYKYYRLDQVQACCGSNAIGALKPVYGSTQGTNFVYADNIVTQQQIGIYAQDQLRFGDGWLVTLNGRYDYVDTELNNRL PAGVSRRSNDDALSGRAGLAYEFDNGLTPYVSAATFFNPLIDTLADGTPASPEEGHQFEAGIKYEPSFFDGSITASVFKL VKDNAIVSYTAGGVTTSGQFGQVESTGFELEAKANLDENWKALASYSYTDLDITKDANPNLIGKSPWIVPAHTASLWVDY AFTDETFEGLSIGGGVRYQGKSWADAANTLRVSDAAVFDAAIRYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRT ITLKLSKKW
Sequences:
>Translated_729_residues MKNLHGMFLSRLALGTAAVVLMGPVMGHAQETTVLKQITVEGQGAENATGPVRGYVAKKSATGSKTETETKAIPQSVSVV GRQEMDDRGAVTKIDEVLRYTPGVTAEPFGTDPDTDWFYIRGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKG PASVLYGGANPGGIVQMVSKRAQDTPVRETEIGINNFGNAFFGFDLGDKVDAEGVWKYRVTGKVSGGDNYTDYSEDLRGF IMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPYVGTVVDAPFGKLDRKAFYGEPDIDNGRVYQSMVGYDVSHEFDNG WKISQNARYGHLYKHETGPYPGGWANADANGQPILDPITNDYMLTRFGYDGLSKVDSFGVDNRIEGQFDTGAVNHSPLFG LDYKYYRLDQVQACCGSNAIGALKPVYGSTQGTNFVYADNIVTQQQIGIYAQDQLRFGDGWLVTLNGRYDYVDTELNNRL PAGVSRRSNDDALSGRAGLAYEFDNGLTPYVSAATFFNPLIDTLADGTPASPEEGHQFEAGIKYEPSFFDGSITASVFKL VKDNAIVSYTAGGVTTSGQFGQVESTGFELEAKANLDENWKALASYSYTDLDITKDANPNLIGKSPWIVPAHTASLWVDY AFTDETFEGLSIGGGVRYQGKSWADAANTLRVSDAAVFDAAIRYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRT ITLKLSKKW >Mature_729_residues MKNLHGMFLSRLALGTAAVVLMGPVMGHAQETTVLKQITVEGQGAENATGPVRGYVAKKSATGSKTETETKAIPQSVSVV GRQEMDDRGAVTKIDEVLRYTPGVTAEPFGTDPDTDWFYIRGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKG PASVLYGGANPGGIVQMVSKRAQDTPVRETEIGINNFGNAFFGFDLGDKVDAEGVWKYRVTGKVSGGDNYTDYSEDLRGF IMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPYVGTVVDAPFGKLDRKAFYGEPDIDNGRVYQSMVGYDVSHEFDNG WKISQNARYGHLYKHETGPYPGGWANADANGQPILDPITNDYMLTRFGYDGLSKVDSFGVDNRIEGQFDTGAVNHSPLFG LDYKYYRLDQVQACCGSNAIGALKPVYGSTQGTNFVYADNIVTQQQIGIYAQDQLRFGDGWLVTLNGRYDYVDTELNNRL PAGVSRRSNDDALSGRAGLAYEFDNGLTPYVSAATFFNPLIDTLADGTPASPEEGHQFEAGIKYEPSFFDGSITASVFKL VKDNAIVSYTAGGVTTSGQFGQVESTGFELEAKANLDENWKALASYSYTDLDITKDANPNLIGKSPWIVPAHTASLWVDY AFTDETFEGLSIGGGVRYQGKSWADAANTLRVSDAAVFDAAIRYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRT ITLKLSKKW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=740, Percent_Identity=34.4594594594595, Blast_Score=351, Evalue=1e-97, Organism=Escherichia coli, GI1787344, Length=746, Percent_Identity=23.8605898123324, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1787024, Length=695, Percent_Identity=23.5971223021583, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1790405, Length=159, Percent_Identity=31.4465408805031, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79304; Mature: 79304
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLHGMFLSRLALGTAAVVLMGPVMGHAQETTVLKQITVEGQGAENATGPVRGYVAKKS CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCEEEEEECC ATGSKTETETKAIPQSVSVVGRQEMDDRGAVTKIDEVLRYTPGVTAEPFGTDPDTDWFYI CCCCCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE RGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKGPASVLYGGANPGGIVQMVSK EECCCCCCCEEEECCHHHHCCCCCEEEECCCCCHHEECCCCCCEEECCCCCCHHHHHHHH RAQDTPVRETEIGINNFGNAFFGFDLGDKVDAEGVWKYRVTGKVSGGDNYTDYSEDLRGF HHCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHEE IMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPYVGTVVDAPFGKLDRKAFYGEPDID ECCEEEECCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCC NGRVYQSMVGYDVSHEFDNGWKISQNARYGHLYKHETGPYPGGWANADANGQPILDPITN CCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DYMLTRFGYDGLSKVDSFGVDNRIEGQFDTGAVNHSPLFGLDYKYYRLDQVQACCGSNAI CEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEHHHHHHHHCCCCC GALKPVYGSTQGTNFVYADNIVTQQQIGIYAQDQLRFGDGWLVTLNGRYDYVDTELNNRL CCCCCCCCCCCCCEEEEECCCEEHHHCCEEEECCEEECCEEEEEECCCEEEEECCCCCCC PAGVSRRSNDDALSGRAGLAYEFDNGLTPYVSAATFFNPLIDTLADGTPASPEEGHQFEA CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC GIKYEPSFFDGSITASVFKLVKDNAIVSYTAGGVTTSGQFGQVESTGFELEAKANLDENW CCEECCCCCCCHHHHHHHHHHHCCEEEEEECCCEEECCCCCCEECCCEEEEEECCCCCCC KALASYSYTDLDITKDANPNLIGKSPWIVPAHTASLWVDYAFTDETFEGLSIGGGVRYQG HHHHCCCCCEEEEECCCCCCEECCCCCEEEECCEEEEEEEEECCCCCCCEEECCCEEECC KSWADAANTLRVSDAAVFDAAIRYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRT CCHHCHHCEEEECHHHHEEHHEEEECCCCEEEEEHHHHHHHHHHHHHCCCEEECCCCCEE ITLKLSKKW EEEEEECCC >Mature Secondary Structure MKNLHGMFLSRLALGTAAVVLMGPVMGHAQETTVLKQITVEGQGAENATGPVRGYVAKKS CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCEEEEEECC ATGSKTETETKAIPQSVSVVGRQEMDDRGAVTKIDEVLRYTPGVTAEPFGTDPDTDWFYI CCCCCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE RGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKGPASVLYGGANPGGIVQMVSK EECCCCCCCEEEECCHHHHCCCCCEEEECCCCCHHEECCCCCCEEECCCCCCHHHHHHHH RAQDTPVRETEIGINNFGNAFFGFDLGDKVDAEGVWKYRVTGKVSGGDNYTDYSEDLRGF HHCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHEE IMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPYVGTVVDAPFGKLDRKAFYGEPDID ECCEEEECCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCC NGRVYQSMVGYDVSHEFDNGWKISQNARYGHLYKHETGPYPGGWANADANGQPILDPITN CCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DYMLTRFGYDGLSKVDSFGVDNRIEGQFDTGAVNHSPLFGLDYKYYRLDQVQACCGSNAI CEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEHHHHHHHHCCCCC GALKPVYGSTQGTNFVYADNIVTQQQIGIYAQDQLRFGDGWLVTLNGRYDYVDTELNNRL CCCCCCCCCCCCCEEEEECCCEEHHHCCEEEECCEEECCEEEEEECCCEEEEECCCCCCC PAGVSRRSNDDALSGRAGLAYEFDNGLTPYVSAATFFNPLIDTLADGTPASPEEGHQFEA CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC GIKYEPSFFDGSITASVFKLVKDNAIVSYTAGGVTTSGQFGQVESTGFELEAKANLDENW CCEECCCCCCCHHHHHHHHHHHCCEEEEEECCCEEECCCCCCEECCCEEEEEECCCCCCC KALASYSYTDLDITKDANPNLIGKSPWIVPAHTASLWVDYAFTDETFEGLSIGGGVRYQG HHHHCCCCCEEEEECCCCCCEECCCCCEEEECCEEEEEEEEECCCCCCCEEECCCEEECC KSWADAANTLRVSDAAVFDAAIRYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRT CCHHCHHCEEEECHHHHEEHHEEEECCCCEEEEEHHHHHHHHHHHHHCCCEEECCCCCEE ITLKLSKKW EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]