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The map label for this gene is ydcN [C]

Identifier: 159184228

GI number: 159184228

Start: 243980

End: 244561

Strand: Direct

Name: ydcN [C]

Synonym: Atu0245

Alternate gene names: 159184228

Gene position: 243980-244561 (Clockwise)

Preceding gene: 15887594

Following gene: 15887596

Centisome position: 8.59

GC content: 60.48

Gene sequence:

>582_bases
ATGATGGAAACTGAAGATCGAATTCTAGAACGCTCCATCGGCGAGCGGATCAAGGTGTTGCGGGCTGAAAGCGGCCTGAC
GCTGGAACGGCTCGCCTCCGAATCCGGCGTCAGTCGCGCCATGATTTCGCGCATCGAGCGAGGGGAGGCGAGCCCCACCG
CGTCGCTGCTTGCGCGCATCTGCGCAGCACTCGGCCTGTCGCTCTCCGGTTTCTTCGCGGAAAACGAAGAGGCGGTTTCC
CCGCTGGTGAAGAAACGCGACCAGCAGCTGTGGAAAGACCCGGAGACCGGTTATGTCCGCCGCGCCATTTCCCCACCACG
GGTGGGGTCCGATGTCGATATCGTTGAAGTTGAATTTCCGGCAGGCGCGCGTGTCGGTTTTCCGCCGCACGCGGCAAGCC
GGGGAATGACGCAATATGTCTGGCTTTTTGAAGGTGTTCTGGAAATGACGAGCGGCGGTGTCGTGCACCTGATGGATCCC
GGAGACTGCCTTTTCATGCCGGTGGGCGAGGGGCATGTCTTTCACAATCCTTCCCAAAAACCCGCCCGTTATGCCGTCGT
GCTGGATCAAAGACAGCGCTGA

Upstream 100 bases:

>100_bases
CTGAACCGTCATTTGCCAGGCGGAACCGGCCGCAAAGAGGCAATCATAATTTCCATTATCGTGGATATTGACTCCATCAT
ATGAGAATAATAATCATCAT

Downstream 100 bases:

>100_bases
TTCCCAGAGGAGTTCATATGGCCACCATCCGCGTATTAAACGGGCAGGAGACCATCGATGCCCTGCCCGAACTCTGCGAT
GTCCTTGCCGAATGTGTGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; Transcription Regulator Protein; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator YdcN; Transcriptional Regulatory Protein; Transcriptional Regulator Merr Family; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSLSGFFAENEEAVS
PLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFPAGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGVVHLMDP
GDCLFMPVGEGHVFHNPSQKPARYAVVLDQRQR

Sequences:

>Translated_193_residues
MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSLSGFFAENEEAVS
PLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFPAGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGVVHLMDP
GDCLFMPVGEGHVFHNPSQKPARYAVVLDQRQR
>Mature_193_residues
MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSLSGFFAENEEAVS
PLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFPAGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGVVHLMDP
GDCLFMPVGEGHVFHNPSQKPARYAVVLDQRQR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=176, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21235; Mature: 21235

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARI
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
CAALGLSLSGFFAENEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFP
HHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECC
AGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGVVHLMDPGDCLFMPVGEGHVFHNPSQK
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEECCCCC
PARYAVVLDQRQR
CCEEEEEECCCCC
>Mature Secondary Structure
MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARI
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
CAALGLSLSGFFAENEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFP
HHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECC
AGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGVVHLMDPGDCLFMPVGEGHVFHNPSQK
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEECCCCC
PARYAVVLDQRQR
CCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA