Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yyaM [H]
Identifier: 15889719
GI number: 15889719
Start: 2420447
End: 2421355
Strand: Direct
Name: yyaM [H]
Synonym: Atu2448
Alternate gene names: 15889719
Gene position: 2420447-2421355 (Clockwise)
Preceding gene: 15889716
Following gene: 159185220
Centisome position: 85.18
GC content: 60.73
Gene sequence:
>909_bases ATGAAGAAGCGAAACATCAGCGTGCCTTCGAAAGCCTATCTCGCCCTCATCATCGCCACGCTCTGCTGGGGCGGCAACAC CGTTGCCGGCAAGCTCGCCGTTGGCCACATCAGCCCCATGGCCTTCACCTTCCTGCGCTGGGTTCTTGCCGTCGCCATCA TCTTCGCCATTTCCGTGCCGCAGCTCATCAAGGACTGGCCGGTGGTGAAACAGCGCCTGCCCTATTTCTTCGTGCTCGGC AGTGTCGGTTACACCGCCTTCAACGTGTTTCTCTACACGGCGCTGCAGCACACCTCGGCCATCAATGCCGCCGTCATCCA GGCCGGCATTCCCATGGTCATCTTCGTCCTGAACTTTGTCCTGTTCCGCACCCGCGTGCTGTTCGGCCAGATCGCCGGTT TCTGCCTCACCATTTCAGGCGTGGCGCTGCTCGCCTCGCATGGTGATCCTCTCTCGCTGCTGCAGCTGGAAATGAATGTC GGCGACGCCGTCATGCTGCTCGCCGTGCTGGTCTATGCCATCTACACCGTCATCCTGCGCTGGAAACCAGCTGTGGACTG GCGCACGCTGATGGCGATCCCCGCCTTTTTCGCCCTTCTCACCTCGGTGCCGCTGGTCTTTTTTGAAATGTCGCGCGAAA GCCTGATCTGGCCGGACCAGAAGGGCTGGATGCTGGTCGTCTACGCCGGTATCTTCGCGTCGCTCATCGCGCAGATCCTC TATATCAAGGGCGTGGAGCAGATCGGCGCCAACCGCGCCGGCCTCTTCATCAACCTCGTCCCGGTCTTCGGCACGCTGCT TTCGGTCTTCGTGCTCAGCGAAACGCTGCACACCTATCAGATCGCGGCGCTGTTCATGGCGCTTGCCGGCATTGCCGTGG CCGAACGAAAAAAATCGCCGGCTTCCTGA
Upstream 100 bases:
>100_bases TTTTCCGTGACAAGGCGCGGATTTCCCGCATTATCTCGCCCCGTGGGGGACAGGCGCGGGCGCAAGGCCGCGGTTCACCC CCTGCCATTTTTCCCGCCCC
Downstream 100 bases:
>100_bases ACCAACGAGGATCAGGAAAACCGGCGCAGTCTGGCAGGCATGAATGGGTGGGGCATCGGATCGAAAATCTTGTCCGGTGC CCGAAGGGAAAGGTCAGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVPQLIKDWPVVKQRLPYFFVLG SVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFVLFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNV GDAVMLLAVLVYAIYTVILRWKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSPAS
Sequences:
>Translated_302_residues MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVPQLIKDWPVVKQRLPYFFVLG SVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFVLFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNV GDAVMLLAVLVYAIYTVILRWKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSPAS >Mature_302_residues MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVPQLIKDWPVVKQRLPYFFVLG SVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFVLFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNV GDAVMLLAVLVYAIYTVILRWKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSPAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33058; Mature: 33058
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVP CCCCCCCCCHHHHHHHHHHHHHCCCCCEECCEEECCCCHHHHHHHHHHHHHHHHHHHHHH QLIKDWPVVKQRLPYFFVLGSVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFV HHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNVGDAVMLLAVLVYAIYTVILR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHH WKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSP HHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AS CC >Mature Secondary Structure MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVP CCCCCCCCCHHHHHHHHHHHHHCCCCCEECCEEECCCCHHHHHHHHHHHHHHHHHHHHHH QLIKDWPVVKQRLPYFFVLGSVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFV HHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNVGDAVMLLAVLVYAIYTVILR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHH WKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSP HHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]