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The map label for this gene is rarA [H]

Identifier: 15889208

GI number: 15889208

Start: 1890787

End: 1892103

Strand: Reverse

Name: rarA [H]

Synonym: Atu1914

Alternate gene names: 15889208

Gene position: 1892103-1890787 (Counterclockwise)

Preceding gene: 159184977

Following gene: 159184976

Centisome position: 66.59

GC content: 62.34

Gene sequence:

>1317_bases
ATGAGCGACGATCTCTTTGCCCCGCAAGTGCCTGTGGAGGTCGCCAACCGGCGGCCTCTGGCCGATCGTCTGCGTCCGAA
AACGCTGTCGGAGGTGAGTGGGCAGCCACATCTGACGGGTGAAGAGGGCGTTCTGCGCCGCATGATCGACAGCGGCTCAC
TGGGATCGATGATCTTCTGGGGGCCGCCCGGTACGGGCAAGACCACGGTTGCCCGCCTGCTGTCCGGCGAGGCGGGGCTG
GCCTTCGAGCAGATATCGGCGATCTTTTCCGGTGTGGCCGATCTAAAGAAGGTGTTCGAGGCAGCGCGCACGCGCCGGAT
GAATGGCCGGCAGACGCTGCTTTTTGTCGACGAAATCCATCGTTTCAACCGCGCCCAGCAGGATAGTTTCCTGCCGGTCA
TGGAAGACGGCACCATCATTCTCGTGGGTGCCACCACCGAAAACCCGTCCTTCGAGCTAAACGCCGCTCTTTTGTCGCGC
GCGCGTGTCCTTACATTCGGTTCGCACGACGAGGATAGCCTGAGCGAACTTCTGAAGCGCGCCGAAGAGGCCGAGGGTAA
ACCACTGCCGCTGACGGAAGAGGCGCGGGCAAGCCTCCTCCGCATGGCCGATGGCGATGGCCGCGCCGTGCTGACGCTTG
CCGAAGAGGTCTGGCGGGCGGCGCGCAAGGATGAGACCTTCGATACCGAAGGGCTGACCCGCATCGTGCAGCGCCGCGCC
CCGGTTTACGACAAGAGCCAGGACGGCCACTACAATCTCATTTCCGCGCTGCATAAATCCGTGCGCGGTTCCGACCCGGA
TGCGGCACTTTATTATCTCGCCCGCATGTTCGATGCCGGTGAAGACCCGCTTTATCTCGGGCGGCGGCTGGTGCGCATGG
CGGTGGAGGATATCGGCCTTGCCGATCCGCAGGCGTTGGCGGTCTGTAATGCCGCCAAGGATGCCTATGATTATCTAGGC
TCGCCGGAAGGGGAACTCGCACTGGCGCAGGCTTGCGTTTATCTCGCCACCGCGCCGAAATCCAACGCCGTTTATACCGC
CTTCAAGGCGGCGATGCGGGCGGCCAAGGAGAACGGCTCGCTGGTGCCGCCGAAACATATTCTCAACGCACCGACCAAGC
TCATGAAGGGCGAGGGTTATGGGGATGGTTACCGTTATGACCATGACGAACCCGACGCCTTTTCCGGGCAGGATTATTTC
CCGGAGAAAATGGGACGTACGACCTTTTACGATCCGCCGGACAGGGGTTTCGAGCGGGAAATACGCAAACGTCTCGACTG
GTGGGCGAAGCTGCGCCGCGAGCGCGGGTCGCGCTAG

Upstream 100 bases:

>100_bases
TCGGCTCCACCGCTGCGGTTGAAAAGGCGCTGGACGACAATCCCGGCTTCTGGCGGGTGGAAATCCTGCGCGACGGGCAG
CGTATCCGGCAGTTCCTGCG

Downstream 100 bases:

>100_bases
TCTCTATGCGGCCGGGGGTACATGCTTCGGTGATCTTGAGAAAAAGAATCAAGCCTCTGGCAAAGTGAATCGCGAAATCG
CGGCAACACACTGTTTTTAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEAGL
AFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSR
ARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRA
PVYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALAVCNAAKDAYDYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGSLVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYF
PEKMGRTTFYDPPDRGFEREIRKRLDWWAKLRRERGSR

Sequences:

>Translated_438_residues
MSDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEAGL
AFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSR
ARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRA
PVYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALAVCNAAKDAYDYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGSLVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYF
PEKMGRTTFYDPPDRGFEREIRKRLDWWAKLRRERGSR
>Mature_437_residues
SDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEAGLA
FEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSRA
RVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRAP
VYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALAVCNAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGSLVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFP
EKMGRTTFYDPPDRGFEREIRKRLDWWAKLRRERGSR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.7233560090703, Blast_Score=311, Evalue=8e-85,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=37.6417233560091, Blast_Score=258, Evalue=7e-69,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=49.645390070922, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1788167, Length=129, Percent_Identity=30.2325581395349, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.9952606635071, Blast_Score=306, Evalue=6e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=205, Percent_Identity=27.3170731707317, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48545; Mature: 48414

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFW
CCCCCCCCCCCHHHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEE
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIH
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
RFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKR
HHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHH
AEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRA
HHHCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
PVYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALAVCNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGS
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
LVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRTTFYDPPDRGFERE
CCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHH
IRKRLDWWAKLRRERGSR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDDLFAPQVPVEVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFW
CCCCCCCCCCHHHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEE
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIH
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
RFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKR
HHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHH
AEEAEGKPLPLTEEARASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRA
HHHCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
PVYDKSQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALAVCNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGS
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
LVPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRTTFYDPPDRGFERE
CCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHH
IRKRLDWWAKLRRERGSR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]