Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yebA [H]
Identifier: 15889135
GI number: 15889135
Start: 1814546
End: 1815844
Strand: Direct
Name: yebA [H]
Synonym: Atu1832
Alternate gene names: 15889135
Gene position: 1814546-1815844 (Clockwise)
Preceding gene: 159184940
Following gene: 15889136
Centisome position: 63.86
GC content: 63.66
Gene sequence:
>1299_bases GTGACTGATACGGCGGAAAATCGGGTATTCGGCAAGAAACGCGAGCCACATGTGCTCATTCTCGCGCGCGGCGAAAACGT GCGGCACATGACCATCCGGCCGTGGATGGCGGCGCTCGCCGGCTGCACGATCGGCCTGTTTTCGCTCGGTTATCTCGGTG CTACCGGCTACCTCATCTTGCGCGACGACCTGATCGGCGCGACCATGGCGCGCCAGACGCGCATGCAGAACGACTATGAA GACCGCATCGCGGCGCTGAGAGCCCAGGTGGACCGCGTCACCTCCCGGCAATTGCTCGATCAGCAGGTCGTTGAAAAAAA AGTGGAGAAACTGCTGGAACAGCAGGCTGCGCTGACCTCGCGCCACGGTCGCATGAGCGAGCTTCTTGAGCGCGCCGAAA ATTCCGGCATCGCAGCCACCACCCCGGCCGCGCCCTCTTCCCTCTCGAATGCCATGGTTCCGGAAAAACGCGCCGACCTC TCCGGCGGCCTTTCCGCCATCGAAAAGCTGATGGCGCCGAAGCCGCAGGCGGAAAAAGCCGCCGCAGCCGACAGACGGGC CGCCTATGTGCCTGAATCCGGCGAAACACCTTCCGACCGTGCGGACCGGGTCTTCTCCAAGGTCACGCTGTCGCTGAAGG ATATCGAACGCCAGCAGATATCGCGCATCGCCCGGCTGACCAGCGACGCCGAGGACAAGGCAAGCGCCATGCAGGACATC ATCCGGCAGGCGGGCCTGAAGATCGAAGAAAACGGCACCGACGATGTCGGCGGTCCCTATGCCGCGCCTTTGGGCGGTGA GACCGACCCGTTCAACCTGTCGCTCACCAGTCTCGACAATGCGCTGAACCGGCTTGATGTCGTCAAGGAAAGTGCGACTG CCCTGCCCTTCGGCAACCCTGCCCCCGGCCGGGCGATCACCAGCCGATTCGGCAACCGGATGGATCCGTTTCTCGGACGT CCCGCTTTGCATACCGGCATCGATTTTCGTGCTGAAACCGGCGCGGACGTCAAATCCACGGGCGCCGGCAAGGTGACGGT GGCGGAAAACTCCGGCGGTTACGGCAATATGGTCGAGATCGATCACGGCCAGGGCGTCTCCACCCGATTCGGCCACCTCT CCGCCATCCTCGTCCGGGCTGGCGACCGGGTGGAAGCCGGCGACGTCATCGGCCGCGCCGGCAGCACCGGCCGCTCCACC GGCCCGCATGTGCATTACGAAGTGCGGCGCAACGATACACCGGTCGATCCCATGCGATACCTGATCGCCGGAGCGGAGCT GAAAACCTATCTAAAATAG
Upstream 100 bases:
>100_bases GCCATAGCTGACGCCCAACGATACGCATCTCCGGCAAAACTTCGTTAACCTTAACGAATTATGATTTCCGTTAAGACATC GGCCAGTCCGGAGAGAGATT
Downstream 100 bases:
>100_bases CAGGCTGATTTTAACCCTTCTTTTGCTCTTTTAACGATAAATCACACAAATTCACGGTGAGGGCTCAAAAGCCCCGCCCG GAGCATCACGTTTCGCGCGC
Product: membrane protein associated metalloendopeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MTDTAENRVFGKKREPHVLILARGENVRHMTIRPWMAALAGCTIGLFSLGYLGATGYLILRDDLIGATMARQTRMQNDYE DRIAALRAQVDRVTSRQLLDQQVVEKKVEKLLEQQAALTSRHGRMSELLERAENSGIAATTPAAPSSLSNAMVPEKRADL SGGLSAIEKLMAPKPQAEKAAAADRRAAYVPESGETPSDRADRVFSKVTLSLKDIERQQISRIARLTSDAEDKASAMQDI IRQAGLKIEENGTDDVGGPYAAPLGGETDPFNLSLTSLDNALNRLDVVKESATALPFGNPAPGRAITSRFGNRMDPFLGR PALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMVEIDHGQGVSTRFGHLSAILVRAGDRVEAGDVIGRAGSTGRST GPHVHYEVRRNDTPVDPMRYLIAGAELKTYLK
Sequences:
>Translated_432_residues MTDTAENRVFGKKREPHVLILARGENVRHMTIRPWMAALAGCTIGLFSLGYLGATGYLILRDDLIGATMARQTRMQNDYE DRIAALRAQVDRVTSRQLLDQQVVEKKVEKLLEQQAALTSRHGRMSELLERAENSGIAATTPAAPSSLSNAMVPEKRADL SGGLSAIEKLMAPKPQAEKAAAADRRAAYVPESGETPSDRADRVFSKVTLSLKDIERQQISRIARLTSDAEDKASAMQDI IRQAGLKIEENGTDDVGGPYAAPLGGETDPFNLSLTSLDNALNRLDVVKESATALPFGNPAPGRAITSRFGNRMDPFLGR PALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMVEIDHGQGVSTRFGHLSAILVRAGDRVEAGDVIGRAGSTGRST GPHVHYEVRRNDTPVDPMRYLIAGAELKTYLK >Mature_431_residues TDTAENRVFGKKREPHVLILARGENVRHMTIRPWMAALAGCTIGLFSLGYLGATGYLILRDDLIGATMARQTRMQNDYED RIAALRAQVDRVTSRQLLDQQVVEKKVEKLLEQQAALTSRHGRMSELLERAENSGIAATTPAAPSSLSNAMVPEKRADLS GGLSAIEKLMAPKPQAEKAAAADRRAAYVPESGETPSDRADRVFSKVTLSLKDIERQQISRIARLTSDAEDKASAMQDII RQAGLKIEENGTDDVGGPYAAPLGGETDPFNLSLTSLDNALNRLDVVKESATALPFGNPAPGRAITSRFGNRMDPFLGRP ALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMVEIDHGQGVSTRFGHLSAILVRAGDRVEAGDVIGRAGSTGRSTG PHVHYEVRRNDTPVDPMRYLIAGAELKTYLK
Specific function: Could be involved in cell wall degradation or formation [H]
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 LysM repeat [H]
Homologues:
Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=48.2456140350877, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=38.1443298969072, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082297, Length=113, Percent_Identity=31.858407079646, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=33.9285714285714, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR013731 - InterPro: IPR016047 - InterPro: IPR002886 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 46542; Mature: 46411
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTAENRVFGKKREPHVLILARGENVRHMTIRPWMAALAGCTIGLFSLGYLGATGYLIL CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEE RDDLIGATMARQTRMQNDYEDRIAALRAQVDRVTSRQLLDQQVVEKKVEKLLEQQAALTS ECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHGRMSELLERAENSGIAATTPAAPSSLSNAMVPEKRADLSGGLSAIEKLMAPKPQAEKA CCCHHHHHHHHHHCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH AAADRRAAYVPESGETPSDRADRVFSKVTLSLKDIERQQISRIARLTSDAEDKASAMQDI HHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IRQAGLKIEENGTDDVGGPYAAPLGGETDPFNLSLTSLDNALNRLDVVKESATALPFGNP HHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC APGRAITSRFGNRMDPFLGRPALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMVEI CCCHHHHHHHCCCCCHHHCCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE DHGQGVSTRFGHLSAILVRAGDRVEAGDVIGRAGSTGRSTGPHVHYEVRRNDTPVDPMRY ECCCCCCHHHHHHHHHEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHH LIAGAELKTYLK HHHHHHHHHHCC >Mature Secondary Structure TDTAENRVFGKKREPHVLILARGENVRHMTIRPWMAALAGCTIGLFSLGYLGATGYLIL CCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEE RDDLIGATMARQTRMQNDYEDRIAALRAQVDRVTSRQLLDQQVVEKKVEKLLEQQAALTS ECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHGRMSELLERAENSGIAATTPAAPSSLSNAMVPEKRADLSGGLSAIEKLMAPKPQAEKA CCCHHHHHHHHHHCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH AAADRRAAYVPESGETPSDRADRVFSKVTLSLKDIERQQISRIARLTSDAEDKASAMQDI HHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IRQAGLKIEENGTDDVGGPYAAPLGGETDPFNLSLTSLDNALNRLDVVKESATALPFGNP HHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC APGRAITSRFGNRMDPFLGRPALHTGIDFRAETGADVKSTGAGKVTVAENSGGYGNMVEI CCCHHHHHHHCCCCCHHHCCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE DHGQGVSTRFGHLSAILVRAGDRVEAGDVIGRAGSTGRSTGPHVHYEVRRNDTPVDPMRY ECCCCCCHHHHHHHHHEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHH LIAGAELKTYLK HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]