Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184940
Identifier: 159184940
GI number: 159184940
Start: 1813632
End: 1814456
Strand: Direct
Name: 159184940
Synonym: Atu1831
Alternate gene names: NA
Gene position: 1813632-1814456 (Clockwise)
Preceding gene: 15889133
Following gene: 15889135
Centisome position: 63.82
GC content: 63.64
Gene sequence:
>825_bases ATGTTCCCCGCCAAAATCATATCCCTGCGCGGCGGCGCCACGGAAGCGATCGTCAGCGCCGATCTCGACCGAAAGACCGA ACTCGCGCAGGAAACCGCAACACGCTGGTTCGAACGCCGCTTGTCATTGCGCTCGCCGCTCGATCCGCCCCTGCCAGAGC GGCCGGGCAGGCCGGAGAAACCGGAGCTCGTTCCGCCGACCGCGGTGGAACGGCGTTCGCTACACAGCGTCAAGGGCCGC ATCGCCCTGCTGCACGCCATCGCCCATATCGAACTCAACGCCGTCGATCTCGCGCTCGATATCGTCGCCCGTTATGCCAG CGAGCCGGTGCCGCATTCCTTTTTCGATGGCTGGATGCAGGTCGCCTTCGAGGAAGCAAAGCACTTCCGGCTGGTTCGGG ACCGGCTGGTAAGCCTTGGGGCTGACTATGGCGACCTGCCCGCCCATGACGGGCTGTGGCAGGCTGCGCATTCCACCCGC AACGATCTGACCGCACGGCTCGCCGTCGTCCCGCTTATCCTGGAGGCGCGCGGGCTGGACGTTACTCCTTCCCTGCAGGC CAAGATGCGCGAGACCGGCGATCTCGAAAGCGCAGCTGTTCTCGATGTCATCTATAATGACGAAAAGGGCCACGTCGCCA TCGGCGCCAAATGGTTCCGGTTCCTCTGCGCGCGTGAAAAGAAGGACCCCGCTGCAACCTTCAGGCAACTGGTACGCTCC AATTTCCGCGGCCCGCTGAAACCACCCTTCAACGATCTCGCCCGCGCCGAAGCCGGCCTGACACCCTCCTTTTACCGGTC ACTCACATCCGTCAGCCATAGCTGA
Upstream 100 bases:
>100_bases ATGGCAAGATCGCCGAAATCTGGAACAAGGTGAAAGTCGCGGGTCACGCACAGGCCGTTCTCGAGGCCGCCAAAAAGCTC TGAGGGGCCATCCAGCCGTG
Downstream 100 bases:
>100_bases CGCCCAACGATACGCATCTCCGGCAAAACTTCGTTAACCTTAACGAATTATGATTTCCGTTAAGACATCGGCCAGTCCGG AGAGAGATTGTGACTGATAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MFPAKIISLRGGATEAIVSADLDRKTELAQETATRWFERRLSLRSPLDPPLPERPGRPEKPELVPPTAVERRSLHSVKGR IALLHAIAHIELNAVDLALDIVARYASEPVPHSFFDGWMQVAFEEAKHFRLVRDRLVSLGADYGDLPAHDGLWQAAHSTR NDLTARLAVVPLILEARGLDVTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAKWFRFLCAREKKDPAATFRQLVRS NFRGPLKPPFNDLARAEAGLTPSFYRSLTSVSHS
Sequences:
>Translated_274_residues MFPAKIISLRGGATEAIVSADLDRKTELAQETATRWFERRLSLRSPLDPPLPERPGRPEKPELVPPTAVERRSLHSVKGR IALLHAIAHIELNAVDLALDIVARYASEPVPHSFFDGWMQVAFEEAKHFRLVRDRLVSLGADYGDLPAHDGLWQAAHSTR NDLTARLAVVPLILEARGLDVTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAKWFRFLCAREKKDPAATFRQLVRS NFRGPLKPPFNDLARAEAGLTPSFYRSLTSVSHS >Mature_274_residues MFPAKIISLRGGATEAIVSADLDRKTELAQETATRWFERRLSLRSPLDPPLPERPGRPEKPELVPPTAVERRSLHSVKGR IALLHAIAHIELNAVDLALDIVARYASEPVPHSFFDGWMQVAFEEAKHFRLVRDRLVSLGADYGDLPAHDGLWQAAHSTR NDLTARLAVVPLILEARGLDVTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAKWFRFLCAREKKDPAATFRQLVRS NFRGPLKPPFNDLARAEAGLTPSFYRSLTSVSHS
Specific function: Unknown
COG id: COG2833
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007402 - InterPro: IPR009078 - InterPro: IPR011197 [H]
Pfam domain/function: PF04305 DUF455 [H]
EC number: NA
Molecular weight: Translated: 30464; Mature: 30464
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPAKIISLRGGATEAIVSADLDRKTELAQETATRWFERRLSLRSPLDPPLPERPGRPEK CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC PELVPPTAVERRSLHSVKGRIALLHAIAHIELNAVDLALDIVARYASEPVPHSFFDGWMQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH VAFEEAKHFRLVRDRLVSLGADYGDLPAHDGLWQAAHSTRNDLTARLAVVPLILEARGLD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAKWFRFLCAREKKDPAATFRQLVRS CCHHHHHHHHHCCCCCHHHHHHHEEECCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHH NFRGPLKPPFNDLARAEAGLTPSFYRSLTSVSHS HCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC >Mature Secondary Structure MFPAKIISLRGGATEAIVSADLDRKTELAQETATRWFERRLSLRSPLDPPLPERPGRPEK CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC PELVPPTAVERRSLHSVKGRIALLHAIAHIELNAVDLALDIVARYASEPVPHSFFDGWMQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH VAFEEAKHFRLVRDRLVSLGADYGDLPAHDGLWQAAHSTRNDLTARLAVVPLILEARGLD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAKWFRFLCAREKKDPAATFRQLVRS CCHHHHHHHHHCCCCCHHHHHHHEEECCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHH NFRGPLKPPFNDLARAEAGLTPSFYRSLTSVSHS HCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]