Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888976
Identifier: 15888976
GI number: 15888976
Start: 1657168
End: 1658025
Strand: Direct
Name: 15888976
Synonym: Atu8112
Alternate gene names: NA
Gene position: 1657168-1658025 (Clockwise)
Preceding gene: 15888975
Following gene: 15888977
Centisome position: 58.32
GC content: 60.26
Gene sequence:
>858_bases GTGAGCGGAGAGCGACCCCTGAAAATCGTGCCGATAGACAACGGAAACCGCGCCGCCGCCGTTGGCCTTCTGGCGAAAGG TTTCCCGGAAAAAAGCGAGGCCTTCTGGGCGCGTGGCCTGTCGCTTATCGGTGAACATCACGAGCGGCGTCATCTCGGCC CGATCGGCCAGTTGCTGATGAAGGGCGACGATGCCGCAGGTGTGCTGCTGACGATCAGAAGCCGCCTGCCCGATACCGGC CGGGTTATCGTCAATCTTTCAAGCTGGTATGTCGAACCGTCCTGCCGCTGGTTCGCGCCGCGCATGCTGCAGATGGCGTC ATCGGACGAAAACGAACTCTTCACCGATCTCACCGCCTCGCCCGAAGCCAGCAAGCTGAACGAGCGGCTGGGTTTTCACA CGGTGACGGATTGCACATTGTTTTATCCCCTGCCGCTGACGGCATTTCGTCCGGCAGGCGCGCGGCTCCATCCGCTGACG CGGACAACGGCGGAAACCCTGTCTTCTGAAATACGCGAGATGCTGGAAGACCACGCCCGTCTCGGCTGCATCGTGGCCAT CCTGGAGGCGGAAGGCCGACGCCACCCGCTGGTATTCCTGAAAACCACGACGAAGAAACTGCCCTCCGCCCGTCTGATCT ATTGCGAGGACCGGGAGATCGCACAACGGCACCTGCCCGCCATTGCCCGCCACCTGCTTGGCAAAGGCCGGCTTGCCCTG ACCATGGCGGCTTGCGAAAAAGACCGTCGCGCCGGTGGCTTTGCCGCACATAAATTCGCGCCAATACAAGTAAAAGGCGC ATGGAACCCACAATTTATTAACGAAACATACTCAGAGTTGGTGTTATTGCCACCCTAG
Upstream 100 bases:
>100_bases CCTCCTGCAGCCATGGCGATTAACGGCACGGTAAATCTATCGTCGTAAGCCAATACTGCGCGGCGGAGTTGAAAATCTCT CCCCGGCCAGAGCAAGGCCA
Downstream 100 bases:
>100_bases GTATTCTAGTGAATCCTGCGTGACCTGATGGAATCCTGGCCTTTACAGGGAAAGCGTCGTTCCGGAGCGGGTCCATGGGG ATCAAACGGGGAATTGGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSGERPLKIVPIDNGNRAAAVGLLAKGFPEKSEAFWARGLSLIGEHHERRHLGPIGQLLMKGDDAAGVLLTIRSRLPDTG RVIVNLSSWYVEPSCRWFAPRMLQMASSDENELFTDLTASPEASKLNERLGFHTVTDCTLFYPLPLTAFRPAGARLHPLT RTTAETLSSEIREMLEDHARLGCIVAILEAEGRRHPLVFLKTTTKKLPSARLIYCEDREIAQRHLPAIARHLLGKGRLAL TMAACEKDRRAGGFAAHKFAPIQVKGAWNPQFINETYSELVLLPP
Sequences:
>Translated_285_residues MSGERPLKIVPIDNGNRAAAVGLLAKGFPEKSEAFWARGLSLIGEHHERRHLGPIGQLLMKGDDAAGVLLTIRSRLPDTG RVIVNLSSWYVEPSCRWFAPRMLQMASSDENELFTDLTASPEASKLNERLGFHTVTDCTLFYPLPLTAFRPAGARLHPLT RTTAETLSSEIREMLEDHARLGCIVAILEAEGRRHPLVFLKTTTKKLPSARLIYCEDREIAQRHLPAIARHLLGKGRLAL TMAACEKDRRAGGFAAHKFAPIQVKGAWNPQFINETYSELVLLPP >Mature_284_residues SGERPLKIVPIDNGNRAAAVGLLAKGFPEKSEAFWARGLSLIGEHHERRHLGPIGQLLMKGDDAAGVLLTIRSRLPDTGR VIVNLSSWYVEPSCRWFAPRMLQMASSDENELFTDLTASPEASKLNERLGFHTVTDCTLFYPLPLTAFRPAGARLHPLTR TTAETLSSEIREMLEDHARLGCIVAILEAEGRRHPLVFLKTTTKKLPSARLIYCEDREIAQRHLPAIARHLLGKGRLALT MAACEKDRRAGGFAAHKFAPIQVKGAWNPQFINETYSELVLLPP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31643; Mature: 31512
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGERPLKIVPIDNGNRAAAVGLLAKGFPEKSEAFWARGLSLIGEHHERRHLGPIGQLLM CCCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KGDDAAGVLLTIRSRLPDTGRVIVNLSSWYVEPSCRWFAPRMLQMASSDENELFTDLTAS CCCCCCEEEEEEEHHCCCCCEEEEEEEHEEECCCCHHHHHHHHHHHCCCCCCEEECCCCC PEASKLNERLGFHTVTDCTLFYPLPLTAFRPAGARLHPLTRTTAETLSSEIREMLEDHAR CCHHHHHHHCCCEEEEEEEEEECCCHHEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHH LGCIVAILEAEGRRHPLVFLKTTTKKLPSARLIYCEDREIAQRHLPAIARHLLGKGRLAL HEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEE TMAACEKDRRAGGFAAHKFAPIQVKGAWNPQFINETYSELVLLPP EHHHHHHHHCCCCEEHHEECEEEEECCCCHHHHHHHHHCEEEECC >Mature Secondary Structure SGERPLKIVPIDNGNRAAAVGLLAKGFPEKSEAFWARGLSLIGEHHERRHLGPIGQLLM CCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KGDDAAGVLLTIRSRLPDTGRVIVNLSSWYVEPSCRWFAPRMLQMASSDENELFTDLTAS CCCCCCEEEEEEEHHCCCCCEEEEEEEHEEECCCCHHHHHHHHHHHCCCCCCEEECCCCC PEASKLNERLGFHTVTDCTLFYPLPLTAFRPAGARLHPLTRTTAETLSSEIREMLEDHAR CCHHHHHHHCCCEEEEEEEEEECCCHHEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHH LGCIVAILEAEGRRHPLVFLKTTTKKLPSARLIYCEDREIAQRHLPAIARHLLGKGRLAL HEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEE TMAACEKDRRAGGFAAHKFAPIQVKGAWNPQFINETYSELVLLPP EHHHHHHHHCCCCEEHHEECEEEEECCCCHHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA