Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888834
Identifier: 15888834
GI number: 15888834
Start: 1499733
End: 1500881
Strand: Direct
Name: 15888834
Synonym: Atu1509
Alternate gene names: NA
Gene position: 1499733-1500881 (Clockwise)
Preceding gene: 15888833
Following gene: 159184792
Centisome position: 52.78
GC content: 62.32
Gene sequence:
>1149_bases ATGCGTTCCACGCTGCGCCGCCTCATCCCGGATGCCGCACCTGTCAGCAACAGGGAAAGGCTACGCACCGCGACCGGCGC CTTTTTCGGCATTCTGCTGACTGGCCTTCTCGGCAGTTTTGCTCTGCGTTTCGATCCCACCCTGCCCGCCATGATCGCGC CGATGGGCGCCTCGGCCGTGCTTTTATTCGCCGTGCCCTCCAGCCCGCTGGCCCAGCCCTGGTCGATCCTGTGCGGCAAT CTGGTATCGGCTTTCGTGGGTGTAACCGTGGCGCTGCTGGTGCAGGATCCATTCCTCGCCAGCGCGCTCGCCATCAGCTT TGCGATCGCCGCGATGATGGCGCTGCGCTGCCTGCATCCGCCAAGCGGTGCCGTCGCGCTGACGGCCGTTCTCGGCGGTC CCGTCGTGCACAGCCTTGGTTATGGCTTCCTGCTCTGGCCGGTCGCCGGAAACTCGCTGATCCTTTTGGCCCTGGCACTC CTCTATAACAATGCCACCGGCCGCGCCTATCCACACGGCCTGAAGCCTGGAAAGGCCGCCCACGGCACGACCGATCCCAC GCCCATCCAGAAGATCGGTTTTTCTTCGACCGATCTCGACGAGGTGCTGAAGGAATATGACGAGGTTCTCGATATCGACC GGGACGAGCTCGAGACCATCCTGCGCAAGACCGAACTGCGCTCTTACCGCCGCCGCGCGCTGCATCTCGATTGCGCCAGT GTCATGTCCCGGGATGTGATCGGTGTCGCCCCCGATGATAGCCTGCGCCACGCCCATGCGCTGATGCATAACCACCATTT CAAGGCGCTGCCCGTCACCAACGACAAGGCCGAAATCGTCGGCATCGTCACCCAGACGGATTTCCTGGAAAAGGCGAGCT GGAGAAACGGCCGTCCCTCCATCGGCTTCCTGCAGCGGCTGCGCCTCATTCTGTCTGGCGCAAGCGCCCCCAACGATACC GTCAAGGACATCATGACCTCGCCGGTGAAAACCGTGCTGCCGGAGACTTCAATCGAGGAAGCCATCATCCGTTTTGCTGA GGAAGGTCTGCATTACCTGCCGGTCATCGACGCGAAAGGAAAGATGGTGGGAATCGTGTCGCAATCCGATGTCATGGTTG CGATGCTGGCGGACAAGGTGGCGGCCTGA
Upstream 100 bases:
>100_bases ATCCCGCATGCGGCGATAACCCAGGAAAATCCGTCCTTTAAATCCGGCTGCCATTTCGGCTAAAAGACGCGCATCTTTTC CGAATTCGAAAGTTGTCATC
Downstream 100 bases:
>100_bases GCCTTTCCTTGGAGCCAAGAACAACCTGCCGTCGGAAGCCGTCAAAGCTTTAAGCGGCGGATGCTCCGACCATGGACAAT GGTGAGAATGAGCACGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: HPP Family Protein; CBS Domain Containing Membrane Protein; HPP Family Protein+B; CBS Domain-Containing Membrane Protein; Cbs Domain Containing Membrane Protein; CbsHpp; HPP Domain-Containing Protein; Signal Transduction Protein; HPP Family/CBS Domain-Containing Protein; IMP Dehydrogenase; HPP Domain And CBS Domain Pair-Containing Protein; Transmembrane Protein; Tryptophan Synthase Alpha Chain; Signal Transduction Protein With Cbs Domains; CBS Domain Pair Family; CBS-Domain-Containing Membrane Protein; Conserved Protein; HPP Family Membrane Protein; HPP Family; HPP Domain Protein; Signal Transduction Protein With CBS Domains
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MRSTLRRLIPDAAPVSNRERLRTATGAFFGILLTGLLGSFALRFDPTLPAMIAPMGASAVLLFAVPSSPLAQPWSILCGN LVSAFVGVTVALLVQDPFLASALAISFAIAAMMALRCLHPPSGAVALTAVLGGPVVHSLGYGFLLWPVAGNSLILLALAL LYNNATGRAYPHGLKPGKAAHGTTDPTPIQKIGFSSTDLDEVLKEYDEVLDIDRDELETILRKTELRSYRRRALHLDCAS VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPSIGFLQRLRLILSGASAPNDT VKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKGKMVGIVSQSDVMVAMLADKVAA
Sequences:
>Translated_382_residues MRSTLRRLIPDAAPVSNRERLRTATGAFFGILLTGLLGSFALRFDPTLPAMIAPMGASAVLLFAVPSSPLAQPWSILCGN LVSAFVGVTVALLVQDPFLASALAISFAIAAMMALRCLHPPSGAVALTAVLGGPVVHSLGYGFLLWPVAGNSLILLALAL LYNNATGRAYPHGLKPGKAAHGTTDPTPIQKIGFSSTDLDEVLKEYDEVLDIDRDELETILRKTELRSYRRRALHLDCAS VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPSIGFLQRLRLILSGASAPNDT VKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKGKMVGIVSQSDVMVAMLADKVAA >Mature_382_residues MRSTLRRLIPDAAPVSNRERLRTATGAFFGILLTGLLGSFALRFDPTLPAMIAPMGASAVLLFAVPSSPLAQPWSILCGN LVSAFVGVTVALLVQDPFLASALAISFAIAAMMALRCLHPPSGAVALTAVLGGPVVHSLGYGFLLWPVAGNSLILLALAL LYNNATGRAYPHGLKPGKAAHGTTDPTPIQKIGFSSTDLDEVLKEYDEVLDIDRDELETILRKTELRSYRRRALHLDCAS VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPSIGFLQRLRLILSGASAPNDT VKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKGKMVGIVSQSDVMVAMLADKVAA
Specific function: Unknown
COG id: COG3448
COG function: function code T; CBS-domain-containing membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40977; Mature: 40977
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSTLRRLIPDAAPVSNRERLRTATGAFFGILLTGLLGSFALRFDPTLPAMIAPMGASAV CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEE LLFAVPSSPLAQPWSILCGNLVSAFVGVTVALLVQDPFLASALAISFAIAAMMALRCLHP EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC PSGAVALTAVLGGPVVHSLGYGFLLWPVAGNSLILLALALLYNNATGRAYPHGLKPGKAA CCCHHHHHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC HGTTDPTPIQKIGFSSTDLDEVLKEYDEVLDIDRDELETILRKTELRSYRRRALHLDCAS CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPS HHHCCCEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHCCCCCCCC IGFLQRLRLILSGASAPNDTVKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKG HHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCC KMVGIVSQSDVMVAMLADKVAA CEEEEECCCCHHHHHHHHHHCC >Mature Secondary Structure MRSTLRRLIPDAAPVSNRERLRTATGAFFGILLTGLLGSFALRFDPTLPAMIAPMGASAV CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEE LLFAVPSSPLAQPWSILCGNLVSAFVGVTVALLVQDPFLASALAISFAIAAMMALRCLHP EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC PSGAVALTAVLGGPVVHSLGYGFLLWPVAGNSLILLALALLYNNATGRAYPHGLKPGKAA CCCHHHHHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC HGTTDPTPIQKIGFSSTDLDEVLKEYDEVLDIDRDELETILRKTELRSYRRRALHLDCAS CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPS HHHCCCEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHCCCCCCCC IGFLQRLRLILSGASAPNDTVKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKG HHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCC KMVGIVSQSDVMVAMLADKVAA CEEEEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA