Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888787
Identifier: 15888787
GI number: 15888787
Start: 1456877
End: 1457686
Strand: Reverse
Name: 15888787
Synonym: Atu1461
Alternate gene names: NA
Gene position: 1457686-1456877 (Counterclockwise)
Preceding gene: 15888788
Following gene: 159184768
Centisome position: 51.3
GC content: 56.54
Gene sequence:
>810_bases ATGGGAATGCGTCTGATTTGCCTGAATGGTTGGGGCGGAAAGCTTCATGACAAGCTCGTTCCCTATATTGCCTCATCCGA CCCCGATATTTTATGCCTTCAGGAGGTGGTGCACACGCCGGCAGCTACGCAGGACTGGTTGAGCTATCGCGATCATGGCG TCGAGTTGCCGCAGCGGGCGAACTTCTTTCGCGATGTCGCCGAGGCCTTGCCGGACCATGTGGCGATATTCTGTCCCGCG GCGCAGGGCGACCTCTGGCAGGGCGAGACACGATACCCTTCCCAATTTGGCCTCGCGACCTTTGTTCGCAAATCCATCGC CATCATAGCGCAGGCGCAGGGTTTCGTGCACGGCGTCTTTTCGGCTGACGGATATGGCAATCATCCGCGATCACGCACAG CCCACGCCATCAGGGTTTTCGATTTTACGACCGGTCAGCCCGTCGTCATTGCCCATATGCATGGGCTGCGCGACCTCGAA GGCAAACATGATATCCCTGCCCGGCTGCACCAGGCAAAACGTCTTGTGCAATTCGTCAAGAATATCGCGGAGGATGGCGA CCGGGTCATCGTCTGTGGCGATTTCAACGTTCTGCCTGATAGCAGGACCTTCGCCGTGTTGAATGAGCTTGATCTTGTCG AGCTCGTTACGACCCGCGGTTTCACCGATACCCGCACCTCGCATTATGCCAAACCGAACAGATATGCGGATTACCTGTTG GTCAATCCGGCCGTCAAGGTCAGTCAATTCGACGTCGTAAGACAGCCGGAAGTCTCGGATCATTGCCCCTTGCTGCTTGA ATTCAGCTGA
Upstream 100 bases:
>100_bases TTTCGTTACGGATAGTTTTGCGACCGCGCAGTCGTCTCTCTCACACGATTGATCTGCACACGTTGCATGCTAAACAGGGC GACGCGGTTAAGGGGATGAA
Downstream 100 bases:
>100_bases AGAGCCGGACGCGGCACTGGGGCCGCTTGTCAGCGCACCAGCCGGATGTCGCTCGTCACCACCGTCTTGCCGGTCCTGCC GTCCTTATCGGTGGTGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MGMRLICLNGWGGKLHDKLVPYIASSDPDILCLQEVVHTPAATQDWLSYRDHGVELPQRANFFRDVAEALPDHVAIFCPA AQGDLWQGETRYPSQFGLATFVRKSIAIIAQAQGFVHGVFSADGYGNHPRSRTAHAIRVFDFTTGQPVVIAHMHGLRDLE GKHDIPARLHQAKRLVQFVKNIAEDGDRVIVCGDFNVLPDSRTFAVLNELDLVELVTTRGFTDTRTSHYAKPNRYADYLL VNPAVKVSQFDVVRQPEVSDHCPLLLEFS
Sequences:
>Translated_269_residues MGMRLICLNGWGGKLHDKLVPYIASSDPDILCLQEVVHTPAATQDWLSYRDHGVELPQRANFFRDVAEALPDHVAIFCPA AQGDLWQGETRYPSQFGLATFVRKSIAIIAQAQGFVHGVFSADGYGNHPRSRTAHAIRVFDFTTGQPVVIAHMHGLRDLE GKHDIPARLHQAKRLVQFVKNIAEDGDRVIVCGDFNVLPDSRTFAVLNELDLVELVTTRGFTDTRTSHYAKPNRYADYLL VNPAVKVSQFDVVRQPEVSDHCPLLLEFS >Mature_268_residues GMRLICLNGWGGKLHDKLVPYIASSDPDILCLQEVVHTPAATQDWLSYRDHGVELPQRANFFRDVAEALPDHVAIFCPAA QGDLWQGETRYPSQFGLATFVRKSIAIIAQAQGFVHGVFSADGYGNHPRSRTAHAIRVFDFTTGQPVVIAHMHGLRDLEG KHDIPARLHQAKRLVQFVKNIAEDGDRVIVCGDFNVLPDSRTFAVLNELDLVELVTTRGFTDTRTSHYAKPNRYADYLLV NPAVKVSQFDVVRQPEVSDHCPLLLEFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30055; Mature: 29924
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMRLICLNGWGGKLHDKLVPYIASSDPDILCLQEVVHTPAATQDWLSYRDHGVELPQRA CCEEEEEEECCCCHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCHHHHHHHHCCCCCCHHH NFFRDVAEALPDHVAIFCPAAQGDLWQGETRYPSQFGLATFVRKSIAIIAQAQGFVHGVF HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE SADGYGNHPRSRTAHAIRVFDFTTGQPVVIAHMHGLRDLEGKHDIPARLHQAKRLVQFVK CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHH NIAEDGDRVIVCGDFNVLPDSRTFAVLNELDLVELVTTRGFTDTRTSHYAKPNRYADYLL HHHCCCCEEEEEECCEECCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEE VNPAVKVSQFDVVRQPEVSDHCPLLLEFS ECCCEEEHHECCCCCCCCCCCCCEEEEEC >Mature Secondary Structure GMRLICLNGWGGKLHDKLVPYIASSDPDILCLQEVVHTPAATQDWLSYRDHGVELPQRA CEEEEEEECCCCHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCHHHHHHHHCCCCCCHHH NFFRDVAEALPDHVAIFCPAAQGDLWQGETRYPSQFGLATFVRKSIAIIAQAQGFVHGVF HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE SADGYGNHPRSRTAHAIRVFDFTTGQPVVIAHMHGLRDLEGKHDIPARLHQAKRLVQFVK CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHH NIAEDGDRVIVCGDFNVLPDSRTFAVLNELDLVELVTTRGFTDTRTSHYAKPNRYADYLL HHHCCCCEEEEEECCEECCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEE VNPAVKVSQFDVVRQPEVSDHCPLLLEFS ECCCEEEHHECCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA