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The map label for this gene is ycaD [C]

Identifier: 15888490

GI number: 15888490

Start: 1143255

End: 1144544

Strand: Reverse

Name: ycaD [C]

Synonym: Atu1152

Alternate gene names: 15888490

Gene position: 1144544-1143255 (Counterclockwise)

Preceding gene: 15888495

Following gene: 159184639

Centisome position: 40.28

GC content: 60.7

Gene sequence:

>1290_bases
ATGAGCCAGATCAGACCTCTTATCCCGCTTCTCGTCACCGCCGGCATTCTGATCGGCGGCAACGGTCTTCAGGGAACCTA
TATCGCGCTGCGCGGCCTCTCCGAGGGCTTTTCGGCCAGCACCATCGGCCTCATCAGCGCCGCCTATAGCATCGGATTCG
CACTCGGCTGCATTTCGGTGACGCAGCTCATGCGCCGGATCGGCCATATCAGAACCTTCGCCACGATGGCGGCGGTCGCA
TCGGCCGCCTCAATTGCCATGCCGCTCGTCCTCCATCCCCTGTTCTGGATGTTGATGCGCTTCGTCATCGGCATTGCCGT
CGCCTGTCTTTTTGCAGCGATCGAAAGCTGGATCAATGCGCAGGTGACGAATTCCAACCGTGCGCGCACGCTGTCGATCT
ATCGTTTCGTCGATCTCGGTTCCGTGACGCTCGCCCAATATATAATTCCCATCGCCGGCATTGATGGACCCGTGGTGTTT
TCGCTGATCGCCATGGCACTGACGCTGTCGTTGGTGCCAATCTCGATTGCCGACAAATCCAACCCCACGCCGCCGAAGCA
GATTCCCTTCAATCTGTTCGCGGTCTGGCGCATCTCGCCGCTTGCCGTCGTCGGTTGCGTGGCCGTCGGTCTCAGCATGG
CGGCGTTTCGCAATATGGGGCCGATCTATGCCGAACAGATCGGAATGTCCGTCACCGCCATCGCCACCTTCATGAGTGCC
GGCATCATCGGCGGCGTGGTGCTGCAATATCCGCTCGGCGTCTACTCCGATCGCTATGACCGGCGCATCATCATTCTCGC
CACCACCGCCGGCTCTGTCATCGTCGGCCTGTTCCTCGCCTTCTTCGCCGGCACCGACGAGTGGAGCAACATCATCGGCG
TCTTCGTTTTTGGCGCCTTTGCCCTGCCGCTCTATTCGCTGAGTTCCGCGCATGGCAACGATCACGCCAGGGAAGGCGAA
CATGCGATGATGTCGGCCGGGCTGCTGTTTTTCTGGTCGGTGGGCGCGACGGTCGGACCGCTGCTCGCCTCGCTGCTGAT
CGATCAGTTCGGCCCGAAGGCACTGTTCAGCTATACGGCCGCGATCCAGATCGTTTTCATCGCCTACACGCTGTACCGGC
TGCAGGTGCGCGAAGGTGTTCCCGTCGAGGAGAGGAACTGGCGGTTCCGTTCGCTATTGCGCACATCCGCCTATTTCCAG
AAGCTCGCCGCCCCCACCCCGCCCCAAAAGGCCGACCACCCCAAAAAAGATGAACCGGAGCCCGATCCGCCCGAGAAAAA
CGATCCTTGA

Upstream 100 bases:

>100_bases
TGTCAAGGCAAAGCGCAAGATTGTCGCCTTCCGCCTGTCCTTTCGCCCGCCTTGGCTTTAGATAGGGCTAATCCAGCCCG
CCAAACCGAGTCGGCCCGCA

Downstream 100 bases:

>100_bases
GGCCGGAAAAGCGGGCTTTGTATTGACATGCGCCCGGCAAAGGGAAAGTAAGACGGATAATTTTCACGAGTGGCCATTTG
CAATGATTGAAACGACTGCC

Product: MFS permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGLISAAYSIGFALGCISVTQLMRRIGHIRTFATMAAVA
SAASIAMPLVLHPLFWMLMRFVIGIAVACLFAAIESWINAQVTNSNRARTLSIYRFVDLGSVTLAQYIIPIAGIDGPVVF
SLIAMALTLSLVPISIADKSNPTPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRNMGPIYAEQIGMSVTAIATFMSA
GIIGGVVLQYPLGVYSDRYDRRIIILATTAGSVIVGLFLAFFAGTDEWSNIIGVFVFGAFALPLYSLSSAHGNDHAREGE
HAMMSAGLLFFWSVGATVGPLLASLLIDQFGPKALFSYTAAIQIVFIAYTLYRLQVREGVPVEERNWRFRSLLRTSAYFQ
KLAAPTPPQKADHPKKDEPEPDPPEKNDP

Sequences:

>Translated_429_residues
MSQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGLISAAYSIGFALGCISVTQLMRRIGHIRTFATMAAVA
SAASIAMPLVLHPLFWMLMRFVIGIAVACLFAAIESWINAQVTNSNRARTLSIYRFVDLGSVTLAQYIIPIAGIDGPVVF
SLIAMALTLSLVPISIADKSNPTPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRNMGPIYAEQIGMSVTAIATFMSA
GIIGGVVLQYPLGVYSDRYDRRIIILATTAGSVIVGLFLAFFAGTDEWSNIIGVFVFGAFALPLYSLSSAHGNDHAREGE
HAMMSAGLLFFWSVGATVGPLLASLLIDQFGPKALFSYTAAIQIVFIAYTLYRLQVREGVPVEERNWRFRSLLRTSAYFQ
KLAAPTPPQKADHPKKDEPEPDPPEKNDP
>Mature_428_residues
SQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGLISAAYSIGFALGCISVTQLMRRIGHIRTFATMAAVAS
AASIAMPLVLHPLFWMLMRFVIGIAVACLFAAIESWINAQVTNSNRARTLSIYRFVDLGSVTLAQYIIPIAGIDGPVVFS
LIAMALTLSLVPISIADKSNPTPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRNMGPIYAEQIGMSVTAIATFMSAG
IIGGVVLQYPLGVYSDRYDRRIIILATTAGSVIVGLFLAFFAGTDEWSNIIGVFVFGAFALPLYSLSSAHGNDHAREGEH
AMMSAGLLFFWSVGATVGPLLASLLIDQFGPKALFSYTAAIQIVFIAYTLYRLQVREGVPVEERNWRFRSLLRTSAYFQK
LAAPTPPQKADHPKKDEPEPDPPEKNDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=336, Percent_Identity=22.6190476190476, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46119; Mature: 45987

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGLISAAYSIGFALGCISV
CCCCHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TQLMRRIGHIRTFATMAAVASAASIAMPLVLHPLFWMLMRFVIGIAVACLFAAIESWINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QVTNSNRARTLSIYRFVDLGSVTLAQYIIPIAGIDGPVVFSLIAMALTLSLVPISIADKS
EEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEECCCC
NPTPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRNMGPIYAEQIGMSVTAIATFMSA
CCCCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHH
GIIGGVVLQYPLGVYSDRYDRRIIILATTAGSVIVGLFLAFFAGTDEWSNIIGVFVFGAF
HHHHHHHHHHCCHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPLYSLSSAHGNDHAREGEHAMMSAGLLFFWSVGATVGPLLASLLIDQFGPKALFSYTA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AIQIVFIAYTLYRLQVREGVPVEERNWRFRSLLRTSAYFQKLAAPTPPQKADHPKKDEPE
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDPPEKNDP
CCCCCCCCC
>Mature Secondary Structure 
SQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGLISAAYSIGFALGCISV
CCCHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TQLMRRIGHIRTFATMAAVASAASIAMPLVLHPLFWMLMRFVIGIAVACLFAAIESWINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QVTNSNRARTLSIYRFVDLGSVTLAQYIIPIAGIDGPVVFSLIAMALTLSLVPISIADKS
EEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEECCCC
NPTPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRNMGPIYAEQIGMSVTAIATFMSA
CCCCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHH
GIIGGVVLQYPLGVYSDRYDRRIIILATTAGSVIVGLFLAFFAGTDEWSNIIGVFVFGAF
HHHHHHHHHHCCHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPLYSLSSAHGNDHAREGEHAMMSAGLLFFWSVGATVGPLLASLLIDQFGPKALFSYTA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AIQIVFIAYTLYRLQVREGVPVEERNWRFRSLLRTSAYFQKLAAPTPPQKADHPKKDEPE
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDPPEKNDP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]