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The map label for this gene is ybfI [H]

Identifier: 15888206

GI number: 15888206

Start: 862009

End: 862815

Strand: Direct

Name: ybfI [H]

Synonym: Atu0865

Alternate gene names: 15888206

Gene position: 862009-862815 (Clockwise)

Preceding gene: 15888205

Following gene: 159184505

Centisome position: 30.34

GC content: 63.82

Gene sequence:

>807_bases
ATGGGCCAAGCCCAGTTCCTGATGCCGAAGACGGTTCTGCCCGGTGTTGCCGCCGTGGTGGCGGATAGCGATCGCTCCTT
TCCACGCCACATGCATGATCAATTCGGCATCGGTCTCATCGCCCGCGGCGCGCAGAAATCGCTCTCCGGCCGCGGCATGG
TGGAGGCCGGCGCCGGTCATGTCATCACCGTCAATCCGGGTGAGGTGCATGACGGCATTCCGCTCGGAGAGGGCGGCCGC
GCGTGGCGGATGCTCTATCTCGATATCGAGATCGTCCGCGACGCCATCGCCGATATCAGCGAAAAGGATCGCGGCACCTT
CGAATTCGCTTATCCCGTTGATACGAGACCTCTGGCGAAGCGGTTCAACGCTGTCTTTTCCGCCGTCACTGCGAAGGAAC
GACCGGGCGAAACCCTTGATAGTGACGAGACCCTGCTGATGTTTCTGGCGGATGCCATGGAGACGGCGGCCAACCCGCCT
GTCGTGGCGGCGCCCGACACCATTAAGCGCGCGAAAAGCAGCATCGATGATGACCCCGCCCGACCGTTCCGCCTTGCCGA
TCTGGCAAAGGAGGCCGGCATGAGCCAGTTCCGCTTCCTGCGGGCTTTTGCGAAGGCCACGGGCCTGACCCCGCACAGCT
ATCTTCTCCAGCGCCGCGTCCATCTGGCACGGCACGCGTTGGCCGACGGCACACGGCCCGCCGAGGCCGCCGTCATCGCC
GGTTTTGTCGACCAGAGCCATCTCAACCGGTTCTTCGTGCGCCAATTCGGCGTGACGCCCGCTGTTTACCGGGCGGCACT
TTCGTAA

Upstream 100 bases:

>100_bases
CGCCATGATCAACCATATGCACCCGTAAACAGCGCAACGTTTGTTTTGCAAGGACATCCTGTGATAGCGTCGCGCTCTTA
TCCGCGGAGCGTGCGCTTTC

Downstream 100 bases:

>100_bases
GGTATGTTAGCGCAAATGGGGAATGGCCTTATGCGGCGGCCTTGGTGTTCTGCGGAGCGTAGGCCGCACTCTCTTCCCTC
ATTCCTGTGCTTGTCACAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MGQAQFLMPKTVLPGVAAVVADSDRSFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGHVITVNPGEVHDGIPLGEGGR
AWRMLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAKRFNAVFSAVTAKERPGETLDSDETLLMFLADAMETAANPP
VVAAPDTIKRAKSSIDDDPARPFRLADLAKEAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIA
GFVDQSHLNRFFVRQFGVTPAVYRAALS

Sequences:

>Translated_268_residues
MGQAQFLMPKTVLPGVAAVVADSDRSFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGHVITVNPGEVHDGIPLGEGGR
AWRMLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAKRFNAVFSAVTAKERPGETLDSDETLLMFLADAMETAANPP
VVAAPDTIKRAKSSIDDDPARPFRLADLAKEAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIA
GFVDQSHLNRFFVRQFGVTPAVYRAALS
>Mature_267_residues
GQAQFLMPKTVLPGVAAVVADSDRSFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGHVITVNPGEVHDGIPLGEGGRA
WRMLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAKRFNAVFSAVTAKERPGETLDSDETLLMFLADAMETAANPPV
VAAPDTIKRAKSSIDDDPARPFRLADLAKEAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIAG
FVDQSHLNRFFVRQFGVTPAVYRAALS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29081; Mature: 28949

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQAQFLMPKTVLPGVAAVVADSDRSFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGH
CCCCCCCCCHHHHCHHHEEEECCCCCCHHHHHHHHCCHHEECCHHHCCCCCCCEECCCCE
VITVNPGEVHDGIPLGEGGRAWRMLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAK
EEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
RFNAVFSAVTAKERPGETLDSDETLLMFLADAMETAANPPVVAAPDTIKRAKSSIDDDPA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCC
RPFRLADLAKEAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIA
CCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GFVDQSHLNRFFVRQFGVTPAVYRAALS
HHHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
GQAQFLMPKTVLPGVAAVVADSDRSFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGH
CCCCCCCCHHHHCHHHEEEECCCCCCHHHHHHHHCCHHEECCHHHCCCCCCCEECCCCE
VITVNPGEVHDGIPLGEGGRAWRMLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAK
EEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
RFNAVFSAVTAKERPGETLDSDETLLMFLADAMETAANPPVVAAPDTIKRAKSSIDDDPA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCC
RPFRLADLAKEAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIA
CCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GFVDQSHLNRFFVRQFGVTPAVYRAALS
HHHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]