Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is dltE [H]
Identifier: 15888205
GI number: 15888205
Start: 861178
End: 861936
Strand: Direct
Name: dltE [H]
Synonym: Atu0864
Alternate gene names: 15888205
Gene position: 861178-861936 (Clockwise)
Preceding gene: 15888203
Following gene: 15888206
Centisome position: 30.31
GC content: 60.34
Gene sequence:
>759_bases ATGAAAATCACCGGCAATACCATTCTCATCACCGGCGGCGGCTCCGGCATCGGTAGGGCGCTGGCGGAAGCGTTTCATCA GGCCGGCAACAGGGTCATCATTTCCGGCCGCCGTCAGGCTGTGCTCGATGAGGTAACGGCCGCCAATCCCGGCATGGCCT CAATGGTCATGGATGCCGGCGATGCCGAAGGCATCCGCGCTTTTGCCGAGGCGCTGGTAAAGGCCCATCCCACCCTCAAT GCCGTCATCAACAATGCCGGCATCATGCGCCCGGAAGAAATCGCCGCCGCGCCTGACTATCTCGACACGGCGGAAGAAAC CATTGCGACCAACCTCCTTGCCCCCATCCGTCTGACGGCGGCGCTTTTGCCGCATTTCCTCAAGCAGCCGGCCGCCACGG TGCTGACGGTCTCCTCCGGCCTCGCTTTCGTGCCCATGGTGCTGACCCCCACTTACAGCGCCACCAAATCGGCCATCCAT GCCTATTCGGTTGCGCTACGCGAGCAACTGAAGGAAACGTCCGTGGAGGTCATCGAAATCGTGCCGCCTTATGTGCAGAC GACGCTGATGGGCGAAGGGCAGGCCAATGACGAAAGGGCCATGCCGCTTGAGGCCTTCATTTCCGAAGTGATGGATATTC TCAAGAACCGCCCGGATGAGAAGGAAGTGGTGGTGGAACGCTGCAAGCCGCTGCGTTTCGCCGCGCAGAACGGCAATTTC GATCAGGTCTTCGCCATGATCAACCATATGCACCCGTAA
Upstream 100 bases:
>100_bases ACACTCTCCTTTGGGTAAGTATAAATCTTTTGGGTGCCTACTTTCGATTGGAGAGTATCATAGCTAACTTCCTTTCAGCC AACAAGCAAAGGATGTTCCA
Downstream 100 bases:
>100_bases ACAGCGCAACGTTTGTTTTGCAAGGACATCCTGTGATAGCGTCGCGCTCTTATCCGCGGAGCGTGCGCTTTCATGGGCCA AGCCCAGTTCCTGATGCCGA
Product: oxidoreductase
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAGDAEGIRAFAEALVKAHPTLN AVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTAALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIH AYSVALREQLKETSVEVIEIVPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF DQVFAMINHMHP
Sequences:
>Translated_252_residues MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAGDAEGIRAFAEALVKAHPTLN AVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTAALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIH AYSVALREQLKETSVEVIEIVPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF DQVFAMINHMHP >Mature_252_residues MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAGDAEGIRAFAEALVKAHPTLN AVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTAALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIH AYSVALREQLKETSVEVIEIVPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF DQVFAMINHMHP
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: COG3967
COG function: function code M; Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=28.125, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=26.0416666666667, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI4557649, Length=220, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI7706318, Length=254, Percent_Identity=22.8346456692913, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI157739938, Length=211, Percent_Identity=21.8009478672986, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1786812, Length=191, Percent_Identity=29.3193717277487, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787820, Length=185, Percent_Identity=28.1081081081081, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787335, Length=204, Percent_Identity=25.4901960784314, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082160, Length=208, Percent_Identity=25, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789208, Length=205, Percent_Identity=21.9512195121951, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=27.6041666666667, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI32563809, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17507613, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=26.6331658291457, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=24.8730964467005, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=4e-14, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=28.0612244897959, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=25.4901960784314, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643142, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24651139, Length=193, Percent_Identity=30.5699481865285, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24647946, Length=146, Percent_Identity=32.1917808219178, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 26985; Mature: 26985
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAG CEEECCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCHHHHHHCCC DAEGIRAFAEALVKAHPTLNAVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTA CHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH ALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIHAYSVALREQLKETSVEVIEI HHHHHHHHCCHHEEEECCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCH DQVFAMINHMHP HHHHHHHHHCCC >Mature Secondary Structure MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAG CEEECCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCHHHHHHCCC DAEGIRAFAEALVKAHPTLNAVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTA CHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH ALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIHAYSVALREQLKETSVEVIEI HHHHHHHHCCHHEEEECCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCH DQVFAMINHMHP HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377; 7797557 [H]