Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887995
Identifier: 15887995
GI number: 15887995
Start: 645744
End: 648182
Strand: Direct
Name: 15887995
Synonym: Atu0653
Alternate gene names: NA
Gene position: 645744-648182 (Clockwise)
Preceding gene: 15887993
Following gene: 159185428
Centisome position: 22.72
GC content: 54.53
Gene sequence:
>2439_bases ATGGTATCGACTTTTCTCAGCTACGACCTCATCAACCGCGATATGAAATCAAGCATTTCGCGCGTGTCGCAGCAGGGGCT CGTGGAGCGGCAGACGAAATATTACAAGGAGAACATCGGCAATGTGAAAAGCGTCGATGAGTTCCTCGGTAACTACCAGC TCTATTCCTATGCCATGGATGCCTTCGGTCTCGGCGAGATGACCTATGCCAAGGCCTTCATGAAAAAGGTGCTGGAAAGC GATCTGAACGACCAGAACAGTTTCGCCAACAAGCTGACCGACGAACGGTATCGCGAATTTGCCGCCTCCTTCAACTTCAC GGCGTCGACGAAGACGGTCCAGACGGATGCGCAGCTCGACAAGATGATCGGTCTTTATGATACGTCGATCACCAATTTGA ACGGCAGCCTTGCGGAAGAGACGCGTTATTACAAGGCGATCATTGGCACGGTGACGAATGCCGATCAGCTGCTGCGCAAC GATCGGACGCGCGCCTATATCTTCCAGGTCTTCAACATCGATGAGAAGACCTATTCCTACGCCCATATCAAGGGATTGAT GACGAGTGACGTCAACGATCCCAATAGCTACATCAACCAGAACTACGGCGCGGCCTATAATGACGCGGTCGAAAAGCTGA CGATGAAGGGCAATATCGAACTGCATGCGCAGGTCACGGCCCGCATTACGGCGATTGATACCGACCTTGCCGGCACCGGT CTGACGGCCGAGGAGCGCACGAAGCTCGAGGCGGAAAAGGTGACCCGCCAGAACCAGCTGACCCAGCTTGAGGCCGTTCT GCCGCCAAAGGATCAATGGGACGCGAAGCTCGCGGCGATCAAGGCGGAGCAGACAACGCTGTCGAACGCCGTCACGCAAT ATAACAAGATGGCGCAGATCGCCAATGCTTTCGAATTCAAGAATGACGGTACGGTGGATGCCGGCGGGGCGCAGACGGCG GACAAACTGAAAGCCATCACGGACTCCTATATTGGCAGCGCACCGCGTGTGACACCGACCGTCGCCACGCTGAACCGCGA TTATTTCGAATCGAAGATTGGTTCCATCACGACGGTAGAGGAACTGATGTCGGACGCGCGGCTTCTCAATTATGTCAGAA CGGCCTTCGACCTGAATGACCTCACTATCGTGCCCGCAACGATCAAGAACATCCTCACCAGCGATCTCAGCGATCCGAAC AATTACATCGCGACCATGGGCAAGAACGACAAACGTTACCTCGCCCTGAAAAACGCATTCAATTTTCTCCCAGATGGAAC GCTTGCGGCCGGCACGACGCCGCAGACGACGACCCAGACCGCCACGACCACCAGCGGTTACATGACCCATTACAACGATG CGGACGACGCTGCAGACGCAAAGGCGCTTTCACTGTTCAAGAGCAGCATAAGCAAGGTCACGAGCGTCAATGATTTCCTC GGAACCAACGCCGTCTATACCTATGCGCTGAGAGCCGTCGGTCTCGATCCCGCCAAGGTCAACATCTCCGATATCCAGAG AGTGCTGACCAGCGACCTGCAGGATAAAAAGAGCTATGTTTATACGCTGAAGGACGACCGATACGTGAAGCTCGCCGAAC TCTTCAACTTCACGAAGGACGGTTCGGTAGGTTCACCCATTCTGGCGCAGTCGGAAATCGAGCTGCAGACCATGTCGGCC GACTACATCAAGAAGAAATCGGCTTTCGGTACCGAAAAGGACAAAGAAGCCGCCCAGACTGAGGCGAAGTATTTCTCAGG CGAGATGCAGAAGATCAAGACGCTCAGTGAATTTCTGGCCAATGACCGCCTGACCAAATTCGCGATGGAATCGCTCGGTA TCGACCCCAAGAGCGTCACCAAAGAGCAGCTGCAGAAAATCTTCACCTCGAACCTTGATGACAAGAACAGCTACGTCAAC AAGGAGATGGACCCGGTCTTCCGTCGCCTTGTCACCGCCTTCAATTTCGACACGGAAGGCAAGCTCCTTCATGAAGACCG CAGTGCGATCCAGACCCGGCGCGGTCTCTATGAAACGCTCGACAATTATCTGACCCAGACCCTGGAATCGCAGGCCGGCG AAGAAAACGCCGGTGTGCGACTGGCGCTCTATTTCAAGCGCATGGCGGCCGGGACGACGTCCTATTATTCGATCCTTGCC GATACCGCGATCCAGAACTTCATCAAGACCACCTTCGGTATTCCGGACGAACTCGGCAACGCCAATGTCGATACGCAGGT GGCTATGATGAAGAAATACTTCGATATCAAGGATTTTCAGGATCCGGATAAGGTCAAGAAGCTGATTGCCCGTTTCACCA TCATGTATGACAACAAGCAGAACGTCGCCGATCCGATCATGACGCTGTTTAATGGCAGCGGCTCGGCGGGTATCAGCGGC GACACGCTGCTGGCGGTCGCAACGTTGCGGGCACGATAA
Upstream 100 bases:
>100_bases CAAGGCTTGCCGTGTGTCCGGATGGGCGCGCGCGAGGTGGATTTAAAACCGGAGCTTCTGGTGTCCCGAGGGGATACGCG GCGCTCCAGGGGGCATTAGG
Downstream 100 bases:
>100_bases GCCGACAACAGAAAGGCCGGGCTATCCGGCCTTAGGCATCTCACCATCCCGGCAGCATATGCCCGGCGCGCAGGCGCGGC ATCTTGGGGTAGGTCTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMDAFGLGEMTYAKAFMKKVLES DLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLDKMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRN DRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQIANAFEFKNDGTVDAGGAQTA DKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPN NYIATMGKNDKRYLALKNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSA DYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVN KEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQNVADPIMTLFNGSGSAGISG DTLLAVATLRAR
Sequences:
>Translated_812_residues MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMDAFGLGEMTYAKAFMKKVLES DLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLDKMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRN DRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQIANAFEFKNDGTVDAGGAQTA DKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPN NYIATMGKNDKRYLALKNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSA DYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVN KEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQNVADPIMTLFNGSGSAGISG DTLLAVATLRAR >Mature_812_residues MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMDAFGLGEMTYAKAFMKKVLES DLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLDKMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRN DRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQIANAFEFKNDGTVDAGGAQTA DKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPN NYIATMGKNDKRYLALKNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSA DYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVN KEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQNVADPIMTLFNGSGSAGISG DTLLAVATLRAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90412; Mature: 90412
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHH AFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLD HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH KMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSY HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCHHHHH AHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCC LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ANAFEFKNDGTVDAGGAQTADKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH ELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDKRYLALKNAF HHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEHHHH NFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL HCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKD CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHCCCCC GSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLA CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEG CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCC KLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCHHHHHHHH DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQ HHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCC NVADPIMTLFNGSGSAGISGDTLLAVATLRAR CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHH AFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLD HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH KMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSY HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCHHHHH AHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCC LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ANAFEFKNDGTVDAGGAQTADKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH ELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDKRYLALKNAF HHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEHHHH NFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL HCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKD CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHCCCCC GSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLA CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEG CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCC KLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCHHHHHHHH DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQ HHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCC NVADPIMTLFNGSGSAGISGDTLLAVATLRAR CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA