Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887784
Identifier: 15887784
GI number: 15887784
Start: 435142
End: 436047
Strand: Reverse
Name: 15887784
Synonym: Atu8122
Alternate gene names: NA
Gene position: 436047-435142 (Counterclockwise)
Preceding gene: 15887788
Following gene: 159184306
Centisome position: 15.35
GC content: 61.37
Gene sequence:
>906_bases ATGGACCAACTCACCCAAACCGCCGTCGCCGAAATCGCAAAGCTCGCGGCTTTGACCAACGCCGCGATTGTGCAGGTTCC GGCACCTGCCGACGCCAAGGGCATTCCCTCCACCGTCCCGGCGCTGCTGGACCCGACCAGCGGCAGGCTGGCGGACGTGT CCGCGATCTTCGCACCGTGGCGCACCCGCCCGGAGCGCAAGCAGGGCACCGCCTATGCCGAGACGCTGGAATCCTTCGTC CAGCTTGTCGAGCGCCACCAGACGGAAAACAGCGTCATCTTTGCGGTGACGGACTGGCGCGACCCCACGTTCACCGCCGT CATCGACTATCACGGCGACGACCCGGACAACGGCAAGCACCGCGTGCACTATGCGTTCCCGCTTTCCGAAGAATGGAAAG CTTGGCAGAGCATCAATGGCAAGGCCCTGACGCAGAACGAGTTTGCGGAATTCATCGAAGACCATATCGCCGAACTGGCC TCGCCGGACTCTGACGAGGTGAAAGACCTCGAATTGCTGTTCAAGGCCAAAGTGGCCTATCCGAATGAACTGGTAGTGCT GTCGCAGGGCTTGCAGATCAACGCCGAAACCCGCGTCAAGACGGCTGTGAAATTGCAAACCGGTGAAAGCCAGATCGTTT TCGAGGAAGACCACAAGAACGCCAACGGCGACCCGATCACCGTGCCGGGCGTCTTCGTCCTCAATATCGCGCCGTTTTTC CAGGGTGAAAGCATTCGCTTGCCCGTGCGCCTGCGCTACCGCCTTCGCGAAGGCAAGCTTTCGTGGACCTGCATGCTTTA CCGGCCCGATACCCACATCACCAAGGCCGTGACCTTCGCCCTGCACGAAACCGCCGCAGAACTTGGCCTGCCGAAGTTCG CGGGCAAGCCGGAAATGTCGGCCTGA
Upstream 100 bases:
>100_bases AGCACGACATGTTCACGCCGCGCGAAGTCTCCGCAAGCTGATTTCCCAACTTTAGCAACCGCGACCGGCCAGTGACCGGC GCACCAACAGAGGAACTGAA
Downstream 100 bases:
>100_bases TTTCAGCCAAAGCGCGGGCGGGTGTCGCCCGCGCTCGCAATCAAAGTCACTGAGAACGGTACAACATGACCGCCGCCATA CCAGCCGCTCACAGAAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MDQLTQTAVAEIAKLAALTNAAIVQVPAPADAKGIPSTVPALLDPTSGRLADVSAIFAPWRTRPERKQGTAYAETLESFV QLVERHQTENSVIFAVTDWRDPTFTAVIDYHGDDPDNGKHRVHYAFPLSEEWKAWQSINGKALTQNEFAEFIEDHIAELA SPDSDEVKDLELLFKAKVAYPNELVVLSQGLQINAETRVKTAVKLQTGESQIVFEEDHKNANGDPITVPGVFVLNIAPFF QGESIRLPVRLRYRLREGKLSWTCMLYRPDTHITKAVTFALHETAAELGLPKFAGKPEMSA
Sequences:
>Translated_301_residues MDQLTQTAVAEIAKLAALTNAAIVQVPAPADAKGIPSTVPALLDPTSGRLADVSAIFAPWRTRPERKQGTAYAETLESFV QLVERHQTENSVIFAVTDWRDPTFTAVIDYHGDDPDNGKHRVHYAFPLSEEWKAWQSINGKALTQNEFAEFIEDHIAELA SPDSDEVKDLELLFKAKVAYPNELVVLSQGLQINAETRVKTAVKLQTGESQIVFEEDHKNANGDPITVPGVFVLNIAPFF QGESIRLPVRLRYRLREGKLSWTCMLYRPDTHITKAVTFALHETAAELGLPKFAGKPEMSA >Mature_301_residues MDQLTQTAVAEIAKLAALTNAAIVQVPAPADAKGIPSTVPALLDPTSGRLADVSAIFAPWRTRPERKQGTAYAETLESFV QLVERHQTENSVIFAVTDWRDPTFTAVIDYHGDDPDNGKHRVHYAFPLSEEWKAWQSINGKALTQNEFAEFIEDHIAELA SPDSDEVKDLELLFKAKVAYPNELVVLSQGLQINAETRVKTAVKLQTGESQIVFEEDHKNANGDPITVPGVFVLNIAPFF QGESIRLPVRLRYRLREGKLSWTCMLYRPDTHITKAVTFALHETAAELGLPKFAGKPEMSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33361; Mature: 33361
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQLTQTAVAEIAKLAALTNAAIVQVPAPADAKGIPSTVPALLDPTSGRLADVSAIFAPW CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCEEHHHHHHCCC RTRPERKQGTAYAETLESFVQLVERHQTENSVIFAVTDWRDPTFTAVIDYHGDDPDNGKH CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCE RVHYAFPLSEEWKAWQSINGKALTQNEFAEFIEDHIAELASPDSDEVKDLELLFKAKVAY EEEEEECCCHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC PNELVVLSQGLQINAETRVKTAVKLQTGESQIVFEEDHKNANGDPITVPGVFVLNIAPFF CCEEEEEECCCEECCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEECCEEEEEEECCC QGESIRLPVRLRYRLREGKLSWTCMLYRPDTHITKAVTFALHETAAELGLPKFAGKPEMS CCCCEEEEHEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC A C >Mature Secondary Structure MDQLTQTAVAEIAKLAALTNAAIVQVPAPADAKGIPSTVPALLDPTSGRLADVSAIFAPW CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCEEHHHHHHCCC RTRPERKQGTAYAETLESFVQLVERHQTENSVIFAVTDWRDPTFTAVIDYHGDDPDNGKH CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCE RVHYAFPLSEEWKAWQSINGKALTQNEFAEFIEDHIAELASPDSDEVKDLELLFKAKVAY EEEEEECCCHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC PNELVVLSQGLQINAETRVKTAVKLQTGESQIVFEEDHKNANGDPITVPGVFVLNIAPFF CCEEEEEECCCEECCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEECCEEEEEEECCC QGESIRLPVRLRYRLREGKLSWTCMLYRPDTHITKAVTFALHETAAELGLPKFAGKPEMS CCCCEEEEHEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA