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The map label for this gene is intD

Identifier: 159184306

GI number: 159184306

Start: 433831

End: 434859

Strand: Reverse

Name: intD

Synonym: Atu0438

Alternate gene names: NA

Gene position: 434859-433831 (Counterclockwise)

Preceding gene: 15887784

Following gene: 15887779

Centisome position: 15.3

GC content: 52.96

Gene sequence:

>1029_bases
ATGGTTACAGTTGAGCTAAAGGGCATCCACACCGTAAAGGCCAAGGGCAATGTTTACTATTACGCTTGGCGCGGTGGCCC
AAGGCTCGACGGCCACCCGGGAACGGCTGCTTTCATGGCATCCTATAACGAAGCCATTGCAAACCGCATGGAACCGGAAA
GCGGACGCTTCCGCTCAATCATCACCCACTACAAAGCAACAGAGTTTAAGAAGCTCGCCGATTCGACGAAGCGCGTGTGG
TCGCCTTGGATTGATCGCATTTCCGAACACTTCGGTAATCTGAGCATTGCGCAATTCAACCGCACTGACAAAATTCGCCC
CCGCATCCGGCAATGGCGCGGCCAGTATAGCGACACACCCCGGGCTGCAGACACGGGCATGCAGGTTTTATCCCGCATCC
TATCCCATGGCGTTGATCCGATGGGAAAGCTGAGTGCAAATCCAGCCGAAGGCATCAAGCATCTATATAGCTCCGACCGC
TCAGAAATCATCTGGACGGACGCCGACATTGCGCAAGTCAAAGCAGAATGCTCTGACGAGGTGAAATGGGTGATTGACCT
TGCCGCCCACACCGGCTTGCGCGTCAGCGATCTACTTAAGCTTTCATGGTCGCATGTCGGACCCGATGCCATCATAATTT
CGACCGGCAAAAGTAGGCACAAGCGCGAAGCGATCATACCGCGTTATGATGCACTGAATGAAATTCTTGAGCGCATCCCA
AAGCGCTCGCCCGTCATCCTTACCAGCTCCAAAAAGAAGCCATGGAAGCCTAGCGGATTGAATACGATGTTTTGGCGGGC
GAAAGAGAAAGCGAAAATGCTCGAACGCGATCTCCACTTCCACGACCTACGAGGTACAGCCGCGACAAAATTCTATAACG
CAGGCCTTTCGGTGCGCGTGATCGCCGAAATCATGGCGTGGGAGGAGGAGACAGTCGGAAAAATTATCCGCCGGTATGTG
GGCCGCAATTCAGCGACATTGGAACATATCAACATGCTCAACAGTAAAAGCAAAGATAAATCTGGATGA

Upstream 100 bases:

>100_bases
GACACATTGCCAGACGGCACATTTCGATGGCATTTTACGCCTCCGGCACAGAACGACGAAGACGATTTGGACCGCGAACT
TGCGGAGTTTGATAAGAAGC

Downstream 100 bases:

>100_bases
TTCACGGCGTGGGCCTGATCCAACCAAAATGAAAAAATCCTTGTTCCAATGGAAGGATTGTTCTTGGCTCGCGAAATCTA
GACTGCCCATGCACCTGATG

Product: phage-related integrase

Products: NA

Alternate protein names: Integrase; Phage-Related Integrase; Phage Integrase; Phage-Related Integrase/Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Integrase/Recombinase

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MVTVELKGIHTVKAKGNVYYYAWRGGPRLDGHPGTAAFMASYNEAIANRMEPESGRFRSIITHYKATEFKKLADSTKRVW
SPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTPRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDR
SEIIWTDADIAQVKAECSDEVKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILERIP
KRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLSVRVIAEIMAWEEETVGKIIRRYV
GRNSATLEHINMLNSKSKDKSG

Sequences:

>Translated_342_residues
MVTVELKGIHTVKAKGNVYYYAWRGGPRLDGHPGTAAFMASYNEAIANRMEPESGRFRSIITHYKATEFKKLADSTKRVW
SPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTPRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDR
SEIIWTDADIAQVKAECSDEVKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILERIP
KRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLSVRVIAEIMAWEEETVGKIIRRYV
GRNSATLEHINMLNSKSKDKSG
>Mature_342_residues
MVTVELKGIHTVKAKGNVYYYAWRGGPRLDGHPGTAAFMASYNEAIANRMEPESGRFRSIITHYKATEFKKLADSTKRVW
SPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTPRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDR
SEIIWTDADIAQVKAECSDEVKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILERIP
KRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLSVRVIAEIMAWEEETVGKIIRRYV
GRNSATLEHINMLNSKSKDKSG

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38794; Mature: 38794

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVELKGIHTVKAKGNVYYYAWRGGPRLDGHPGTAAFMASYNEAIANRMEPESGRFRSI
CEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
ITHYKATEFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCC
RAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSDE
CHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
VKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILERIP
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCHHHHHHHHHHCC
KRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLSVRV
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHH
IAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNSKSKDKSG
HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVTVELKGIHTVKAKGNVYYYAWRGGPRLDGHPGTAAFMASYNEAIANRMEPESGRFRSI
CEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
ITHYKATEFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCC
RAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSDE
CHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
VKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILERIP
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCHHHHHHHHHHCC
KRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLSVRV
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHH
IAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNSKSKDKSG
HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA