Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is phoU [H]
Identifier: 15887772
GI number: 15887772
Start: 421331
End: 422056
Strand: Direct
Name: phoU [H]
Synonym: Atu0424
Alternate gene names: 15887772
Gene position: 421331-422056 (Clockwise)
Preceding gene: 15887771
Following gene: 15887773
Centisome position: 14.83
GC content: 59.09
Gene sequence:
>726_bases ATGACACAGACAACGACCCATTCGCATATTCTGTCTGCCTATGATGATGAACTGAAGTTTCTGACGCGTCGTATCGCCGA AATGGGCGGTCTTGCCGAGCAGATGTGCGGCGACGCCGTGCGTGCGCTCGTGAATTCCGATGCTGCGCTCGCGCAGAAAG TCATTTCGGACGATACCATTCTTGACCACGCTGAGCGCGAAATCGGCGACAAGGCGATTGTCACCATCGCCAGACGCCAG CCGATGGCGGCTGACCTTCGCGAAATCATCGGCACCCTGCGTATTGCCGCTGACCTGGAGCGCGTCGGTGATCTCGGCAA GAATACCGCCAAGCGCGTCATTGCGGTTGCCGGAACCGGCGTTCCGCGCAAGCTCGCCCGTGGCATCGAGCATCTGTCGG AACTGGCGCTGGTGCAGCTCAAGGAAGTGCTTGACGTCTATTCCACCCGATCCGCCGAGAAGGCCAATGCCATCCGCGAG CGCGACGAGGAAATCGACGCCATGTATACGTCGCTCTTCCGTGAGCTTCTGACCTACATGATGGAAGATCCGCGCAATAT CACCACCTGCACGCATCTTCTGTTCTGCGCCAAGAACATCGAGCGTATCGGCGACCACGCCACCAATATCGCCGAGACGA TCTATTACATGGCCACCGGCAGCCAGCCGGAGGGCGAGCGTCCGAAGGACGACAGTTCCAACACGCTCGGTTCGGTGACC GAGTAA
Upstream 100 bases:
>100_bases CTGATCCTGGCCGGCGCTTTCTCGAAACCGAACAAGACTGGTGCCTCTGCCGTGCCCGCTTCCGGGCACGCGCATGCAGG CCAAGCCGGAGGACTAGACC
Downstream 100 bases:
>100_bases CAGACAGGCAGAGGCTTGTGCGGAGTTAGCATATGGTGCCGAAGATTGCAGTTGTGGAAGACGAGGAAGCGCTGAGCGTC CTGCTTCGTTACAATCTCGA
Product: phosphate transport system regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALVNSDAALAQKVISDDTILDHAEREIGDKAIVTIARRQ PMAADLREIIGTLRIAADLERVGDLGKNTAKRVIAVAGTGVPRKLARGIEHLSELALVQLKEVLDVYSTRSAEKANAIRE RDEEIDAMYTSLFRELLTYMMEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGSQPEGERPKDDSSNTLGSVT E
Sequences:
>Translated_241_residues MTQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALVNSDAALAQKVISDDTILDHAEREIGDKAIVTIARRQ PMAADLREIIGTLRIAADLERVGDLGKNTAKRVIAVAGTGVPRKLARGIEHLSELALVQLKEVLDVYSTRSAEKANAIRE RDEEIDAMYTSLFRELLTYMMEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGSQPEGERPKDDSSNTLGSVT E >Mature_240_residues TQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALVNSDAALAQKVISDDTILDHAEREIGDKAIVTIARRQP MAADLREIIGTLRIAADLERVGDLGKNTAKRVIAVAGTGVPRKLARGIEHLSELALVQLKEVLDVYSTRSAEKANAIRER DEEIDAMYTSLFRELLTYMMEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGSQPEGERPKDDSSNTLGSVTE
Specific function: Not known; probably involved in phosphate transport and/or metabolism [H]
COG id: COG0704
COG function: function code P; Phosphate uptake regulator
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoU family [H]
Homologues:
Organism=Escherichia coli, GI1790161, Length=221, Percent_Identity=33.9366515837104, Blast_Score=136, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008170 [H]
Pfam domain/function: PF01895 PhoU [H]
EC number: NA
Molecular weight: Translated: 26606; Mature: 26474
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALVNSDAALAQKVISDDTI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH LDHAEREIGDKAIVTIARRQPMAADLREIIGTLRIAADLERVGDLGKNTAKRVIAVAGTG HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC VPRKLARGIEHLSELALVQLKEVLDVYSTRSAEKANAIRERDEEIDAMYTSLFRELLTYM CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGSQPEGERPKDDSSNTLGSVT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC E C >Mature Secondary Structure TQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALVNSDAALAQKVISDDTI CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH LDHAEREIGDKAIVTIARRQPMAADLREIIGTLRIAADLERVGDLGKNTAKRVIAVAGTG HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC VPRKLARGIEHLSELALVQLKEVLDVYSTRSAEKANAIRERDEEIDAMYTSLFRELLTYM CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGSQPEGERPKDDSSNTLGSVT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]