Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 15887559

GI number: 15887559

Start: 211567

End: 212448

Strand: Direct

Name: yafC [H]

Synonym: Atu0207

Alternate gene names: 15887559

Gene position: 211567-212448 (Clockwise)

Preceding gene: 159184209

Following gene: 159184210

Centisome position: 7.45

GC content: 61.0

Gene sequence:

>882_bases
ATGAATTGGGATGACGTCCGCATATTCCTTGCCGTTGCCCGTTCCGGGCAGATACTCGCCGCATCGAAACGGCTTGGACT
CAACCATGCAACGCTTTCGCGGCGATTGACGCTGCTGGAGCAGGCGCTGAAGACCCAGTTGTTTATCCGTCGGACGAATG
GCTGCGAAATGACCGAGGAGGGTCAGCGGTTTCTGGGTGCCGCCGAGCGCATGGAAACCGAAATGCTGAATGCCCAGGCA
AATCTCGGACGGGTCGATACGGCGGTGGCGGGAACGGTGCGCATCGGCGCGCCAGATGGCCTCGGCGTCTCCTTCCTCGC
GCCACGGCTCGGCCGGCTGACGGCCCGTTACCCCGACCTGAAAATCCAGCTCGTGCCCGTGCCCCGGTCCTTCTCTTTGT
CGCAGCGCGAGGCCGATATCGCCATCACCATCGAGCGGCCGGAGCAGGGCAGGTTGATGTTTTCGAAACTGACAGATTAT
TCGCTGGGCCTCTATGCCTCCGCAGATTATCTGGCCGACCACGGAACGCCTGACGATGTCGAGGCGCTGAAGCGTCACCG
GCGGATCGGATATGTGGAGGATTTGATCTTTTCACCCTCGCTCAATTATACTGGCGAGATCATGCGAGACTGGGACGCGG
CCTTCGAAATCTCCAGCGCCACCGGCCAGACGGAGGCGGTGCGGTCGGGGGCGGGGATCGGCATCCTGCACAATTACATC
GCCGGGCAATATCCCGAACTTATGCGGATCATGCCACATCTCGGTATCAGCCGCTCCTACTGGACGGCCTATCACGAATC
CGCCCGCCAGCTGGTCCGTGTCCGCACGGTCGTCGATTTTCTCCAGGAACTGGTCGCGGAAGAGCGGCGAATCTTCATCT
GA

Upstream 100 bases:

>100_bases
TGCAGACGCCGCACTTCCTGAAATACAAGGAGGGTGTGGCGGGAATGGTGACATCGCTCACTTTGATCGAGGTTGAACCC
GTAATGATGCGCAGCAAGCC

Downstream 100 bases:

>100_bases
CATCCGCCTGTTGATCTATTAGTACTATTAATTGCTGATGGCAGGTCGTTCCGGGCTTGACAAAGGGCTGCTGGCTGGAC
GACCAATGCAGCCATTGGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEEGQRFLGAAERMETEMLNAQA
NLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLKIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDY
SLGLYASADYLADHGTPDDVEALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI
AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI

Sequences:

>Translated_293_residues
MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEEGQRFLGAAERMETEMLNAQA
NLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLKIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDY
SLGLYASADYLADHGTPDDVEALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI
AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI
>Mature_293_residues
MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEEGQRFLGAAERMETEMLNAQA
NLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLKIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDY
SLGLYASADYLADHGTPDDVEALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI
AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=28.0405405405405, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=25.7950530035336, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=28.2894736842105, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=173, Percent_Identity=27.1676300578035, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787128, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789639, Length=187, Percent_Identity=25.1336898395722, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693193, Length=218, Percent_Identity=25.2293577981651, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=175, Percent_Identity=26.2857142857143, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32856; Mature: 32856

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE
CCCCCEEEEEEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHH
GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEECEEEECCCCCCCHHHHHHHHHHHHCCCCCC
KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV
EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEHHHHCCCCCCEEECCHHHHCCCCCHHH
EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI
HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHCCCCHHHHHHHH
AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE
CCCCCEEEEEEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHH
GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEECEEEECCCCCCCHHHHHHHHHHHHCCCCCC
KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV
EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEHHHHCCCCCCEEECCHHHHCCCCCHHH
EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI
HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHCCCCHHHHHHHH
AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]