Click here to switch to the map view.

The map label for this gene is yfkA [H]

Identifier: 57652096

GI number: 57652096

Start: 1998947

End: 2000098

Strand: Direct

Name: yfkA [H]

Synonym: SACOL1935

Alternate gene names: 57652096

Gene position: 1998947-2000098 (Clockwise)

Preceding gene: 57652088

Following gene: 57652100

Centisome position: 71.15

GC content: 33.68

Gene sequence:

>1152_bases
ATGAATAGCGTCAAATTGAAGCAACCTGTTAGCATTTACAATGATCCATGGGAAGCATATAACGATGTTAAAGAACATGG
CCAATTAACTTTAAGTAACATCGAATTTACAACTACAAATCTTTGTAATATGCGTTGTAGCCACTGTGCAGTTGGTTATA
CTTTACAAACTGTCGACCCCGAGCCTTTAGATATGGACTTAATTTATCGTAGACTTGATGAAATTCCAAATCTGCGAACG
ATGTCTATTACAGGTGGCGAACCAATGTTTTCTAAAAAGTCTATTAGAAATGTTGTTAAACCTCTATTAAAGTATGCACA
TCATCGAGGTATATATACACAAATGAATTCAAACCTAACATTGCCTCAAGATCGTTATTTAGATATTGCTGAATATATCG
ATGTTATGCATATCTCACACAACTGGGGAACAACTGATGAATTCGCAAATGTTGGCTTTGGCGCAATGAAGAAGCAACCA
CCGTTAAAAGCTAAGTTAAAATTATATGAACAAATGATTTCGAATGCACGTACATTATCAGAACAAGGAATGTTTGTATC
TGCGGAAACAATGCTCAATCAAAGTACGCTACCACATTTACGAAAAATACATCAAGAAGTCGTTCATGATATGAAATGTA
GCAGACACGAGATTCACCCTATGTATCCAGCTGACTTTGCAAGTCAATTAAATGTGTTAACTCTAGCGGAAATGAAAAAG
ACAATTCATGATATATTGGATTTCAGAGATGAAGATATTTGGATGTTATTTGGTACTTTGCCTGTGTTTCCATGCTTAAA
GGATGATGAAGATCAAAAGTTACTATCACGTTTAAGAAATGCTAAAAATGTAACGACTAGAAATGACCCGGATGGCCGTA
GTCGTTTAAATGTCAATGTATTTACAGGTAATGTAATCGTAACTGATTTCGGAGATGAAACAGGTACAATTTCGAATATA
CAAAAAGATAAATTAACAGATGTATTTGATAAATGGTTATCCTCTGATCTTGCTAAATCATTAAATTGTCATTGTTCCGA
GTTTAGTTGTTTAGGACCAAATGTTCTTGTTAAAAATATGTACTATCCGAATATGGATTTTAAAGATAATGAGCGTCATA
TGCACAAACAACCACAAATTATACAATTTTAA

Upstream 100 bases:

>100_bases
TTTTCAATTAACTAAAATTAAGAGATAATTTGTTACGAGTGATAATACGAAGTGGTATCATACCGATATGAACCAAATAG
AAAGAAGGAAGTTTAAGACG

Downstream 100 bases:

>100_bases
AAACTCTTAATTATGCGGAGAAGCACTTTATCGATAAGTAGTCTCCGCATATTTTAATGCTATTATAAAATAAAAAACAA
TTAATTGCTGGCAGTACTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDPEPLDMDLIYRRLDEIPNLRT
MSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLTLPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQP
PLKAKLKLYEQMISNARTLSEQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNVFTGNVIVTDFGDETGTISNI
QKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNMYYPNMDFKDNERHMHKQPQIIQF

Sequences:

>Translated_383_residues
MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDPEPLDMDLIYRRLDEIPNLRT
MSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLTLPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQP
PLKAKLKLYEQMISNARTLSEQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNVFTGNVIVTDFGDETGTISNI
QKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNMYYPNMDFKDNERHMHKQPQIIQF
>Mature_383_residues
MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDPEPLDMDLIYRRLDEIPNLRT
MSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLTLPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQP
PLKAKLKLYEQMISNARTLSEQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNVFTGNVIVTDFGDETGTISNI
QKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNMYYPNMDFKDNERHMHKQPQIIQF

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR014866 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08756 YfkB [H]

EC number: NA

Molecular weight: Translated: 44166; Mature: 44166

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
CCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECEEEEECHHHHCCHHHHEECCEEEECCC
EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
CCHHHHHHHHHHHHHHEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
HCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHH
TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
HHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
EECCEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
YYPNMDFKDNERHMHKQPQIIQF
CCCCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
CCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECEEEEECHHHHCCHHHHEECCEEEECCC
EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
CCHHHHHHHHHHHHHHEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
HCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHH
TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
HHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
EECCEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
YYPNMDFKDNERHMHKQPQIIQF
CCCCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]