Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 57651959

GI number: 57651959

Start: 1654977

End: 1655729

Strand: Reverse

Name: recO [H]

Synonym: SACOL1623

Alternate gene names: 57651959

Gene position: 1655729-1654977 (Counterclockwise)

Preceding gene: 57651960

Following gene: 57651957

Centisome position: 58.93

GC content: 32.67

Gene sequence:

>753_bases
TTGTTAATGCGCCAAAAAGGGATTATCATCAAAGCAGTTGATTATGGTGAATCTGATAAAATTATCACGATTTTAAATGA
GCATGGTGCAAAAGTACCACTTATGGCAAGGCGTGCTAAAAAAGTTAAGACGGGTTTACAAGCGCAAACGCAATTGTTTG
TTTATGGTTTGTTTATTTACAATCAGTGGCGAGGTATGGGAACGTTAAATTCTGTAGATGTTATTAGTCAACATTATAAA
TTACAAATGGACCTTTACGTAAGCAGTTATGCCGCTCTGGCAGCTGAAACTATTGAGCGCTCAATGGATGAAGGTGACAT
TGCACCATATAACTATCAATTATTACAATTTGTTCTTGAAAAAATAGAATCAGGTACATCTGCACAGTTAATGTCAGTCG
TAGTTATGTTAAAGTGCATGAAACGATTTGGTTTTACTGCATCATTTAATCGCTGTGCTGTGAGTGGTAATGACACACAA
GCAGATTTAATAGGTTATAGTTTTAAGTTTGACGGTGCGATTTCAAGGCAAGAGGCTTCTAAAGATGTACATGCAGTTAT
ATTATCGAATAAAACACTATATTTATTAGATGTATTACAAAAATTACCGATAGATAAAATGAATTCATTGAATATCCATC
AAGAAATTATTGATGAAATGTCAGATATCATTTTAATGTTATATCGTGAATATGCAGGTATGTTTTTTAAAAGTCAGAAA
CTAATCAACCAATTAAAAAGATTGGAACAATAA

Upstream 100 bases:

>100_bases
ATGGGTCAAAGTTCAAAGAGACTGGCGAAACAAAGTTAACTTTATTCGCCAAATTGGTTATGTTGAAGACCAAGATTAAT
CTTAAAAGTGGTGAAGATAA

Downstream 100 bases:

>100_bases
CATAAAATAATAAAAGGTATTCAAGTAGCCACATAGATGTGTTTATTTGAATACCTTTTTGAATAGAAAAGAGATACTGG
CAATTTTACTAACCAGTATC

Product: RecO family DNA repair protein

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYK
LQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQ
ADLIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
LINQLKRLEQ

Sequences:

>Translated_250_residues
MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYK
LQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQ
ADLIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
LINQLKRLEQ
>Mature_250_residues
MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYK
LQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQ
ADLIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
LINQLKRLEQ

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 28451; Mature: 28451

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHH
NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
HHHCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHC
KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LINQLKRLEQ
HHHHHHHHCC
>Mature Secondary Structure
MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHH
NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
HHHCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHC
KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LINQLKRLEQ
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA