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The map label for this gene is rpiR [C]

Identifier: 57651241

GI number: 57651241

Start: 349294

End: 350094

Strand: Reverse

Name: rpiR [C]

Synonym: SACOL0314

Alternate gene names: 57651241

Gene position: 350094-349294 (Counterclockwise)

Preceding gene: 57651243

Following gene: 57651239

Centisome position: 12.46

GC content: 33.33

Gene sequence:

>801_bases
ATGAAATTTGAGAATCGTGTTCAACGTTATCAACATTTATTTACAAAAACTGATAAACGCATCGTCAATTATATAAGACA
AAATGGTTATAGCGATGCCTTTTCAACGATTAACTCCTTAGCCCATGCGATTGGTACATCACCAGCAACGATGACACGCT
TTAGTCATAAGCTGGATTATGAGAATTTCCAAGATTTAAAATTTAATATTCAACAAGAAATGACAGAGACAGTTATTGAA
AATAGCCCAATTATTCAAAGAATTCATAAATATCATCAACAAATCATTCAACAAACTGGTGAATTTATTGATAACGACAT
TATCCAAACCTTTATCGACAAACTTCAATCAAGTCGACATATACTCTTTGCTGGACTAGGTAGCTCTGGTTTATCAGCGA
CTGAATTTTATTATCGTATGATTCGTATGGGGCTAAAAGGTAATGTTACTACCGATTCACATTTAATGAAAATATCGGCA
TCCCTACTATCTCATTCGGATATGTTTATTGCTATGTCAAATAGTGGTAATACTTCGGAATTAATTTCTGCAGCGGAAGT
CGCCAAATCTCATGGTGCATATGTCGTTGCCATCACAAATTTTGAAGGTAGTAAACTTACAGATTGTGCAGATTTAGTAC
TTTTAACAACGGATCAATCGCGTAATACCGACCATCAATTTATCAACACACAAATTGCGACACTCTTTTTAATCGATATC
GTGAGTTATCATTTATTAGAAAATACGAATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATA
A

Upstream 100 bases:

>100_bases
TTTACAATATATCATTAAGATAATTTTTATCAATGCTTTTTACTATCTTGAAAATATTTTTCATATATAATAGTAATCAT
TAAGATGAAGGGGTGACACA

Downstream 100 bases:

>100_bases
CTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAAT
TTCAATACCAAATATTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDYENFQDLKFNIQQEMTETVIE
NSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRHILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISA
SLLSHSDMFIAMSNSGNTSELISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
VSYHLLENTNLSQTYQHTKSIILDNK

Sequences:

>Translated_266_residues
MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDYENFQDLKFNIQQEMTETVIE
NSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRHILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISA
SLLSHSDMFIAMSNSGNTSELISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
VSYHLLENTNLSQTYQHTKSIILDNK
>Mature_266_residues
MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDYENFQDLKFNIQQEMTETVIE
NSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRHILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISA
SLLSHSDMFIAMSNSGNTSELISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
VSYHLLENTNLSQTYQHTKSIILDNK

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=260, Percent_Identity=21.9230769230769, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082130, Length=260, Percent_Identity=25, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788767, Length=218, Percent_Identity=22.4770642201835, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788159, Length=257, Percent_Identity=23.3463035019455, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30259; Mature: 30259

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHH
VSYHLLENTNLSQTYQHTKSIILDNK
HHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHH
VSYHLLENTNLSQTYQHTKSIILDNK
HHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]