Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is fpg [H]
Identifier: 57650560
GI number: 57650560
Start: 1766901
End: 1767773
Strand: Reverse
Name: fpg [H]
Synonym: SACOL1736
Alternate gene names: 57650560
Gene position: 1767773-1766901 (Counterclockwise)
Preceding gene: 57650561
Following gene: 57650559
Centisome position: 62.92
GC content: 32.07
Gene sequence:
>873_bases ATGCCCGAATTACCAGAAGTAGAACATGTAAAAAGAGGAATTGAACCCTACGTTATAAATCAAAAAATTGAACACGTTAT ATTTTCGGATAAAGTAATCGAAGGTAAAGCTCAAGGCAAGGAAACAATTATAAAAGGAATTGAATTAGATACTTTTAAAA CTTTATCGGAAGGCTATACCATTACAAATGTAGAACGAAGAAGTAAATATATCGTTTTTCAGCTAGATAATAAACGAGAA CAACGTACATTAATTAGTCATTTAGGTATGGCGGGCGGTTTTTTCATTGTAGATGAACTTGAAGATATTATGATACCTAA TTATCGTAAGCATTGGCATGTTATTTTTGAGTTGTCAAATGACAAAAAGTTAATTTATTCAGATATACGTCGTTTTGGAG AAATTAGAAATGTTGCGTCTGTAGCATCTTATCCTTCATTTTTAGAAATAGCGCCTGAACCTTTTTCAAATGAAGCATTG ACGTATTATTTAAATCGAATTCATCAACAGTCTAATAAGAATAAACCAATCAAACAAGTGATTTTGGATCATAAAGTAAT CGCAGGTTGTGGAAATATTTACGCATGTGAAGCGTTGTTTCGTGCAGGTGTTTTACCAGATAAAAAAGTAAAAGACTTAA CACACCAACAACAAGAAATGGTTTTTTATTATGTTAGAGAAGTACTAGAAGAAGGTATTAAATATGGCGGTACAAGTATT TCAGATTATCGTCATGCTGATGGAAAAACTGGTGAGATGCAATTGCATCTTAATGTATATAAGCAGCCGGTATGCAAAGT GTGTGGAAGTCAAATTGAAACAAAAATCATCGCGACAAGAAATAGTCATTATTGTCCAGTATGTCAAAAATAA
Upstream 100 bases:
>100_bases AGAGATAATGGAAAATGCATTGCAATTAGATGTTCCATTAAAAGTAGACTCAAGTTATGGTGCAACCTGGTATGATGCAA AATAAAGTGAGGTTAATGGT
Downstream 100 bases:
>100_bases AGAAAGAGTGAAATTATGCCGAAAGTTATTGGTCTAACAGGTGGAATCGCCTCAGGAAAATCAACAGTATCAGAACTCTT ATCCGTATTCGGTTTTAAAG
Product: formamidopyrimidine-DNA glycosylase
Products: NA
Alternate protein names: Fapy-DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase mutM; AP lyase mutM [H]
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MPELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYTITNVERRSKYIVFQLDNKRE QRTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSNDKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEAL TYYLNRIHQQSNKNKPIKQVILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKYGGTSI SDYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKIIATRNSHYCPVCQK
Sequences:
>Translated_290_residues MPELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYTITNVERRSKYIVFQLDNKRE QRTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSNDKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEAL TYYLNRIHQQSNKNKPIKQVILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKYGGTSI SDYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKIIATRNSHYCPVCQK >Mature_289_residues PELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYTITNVERRSKYIVFQLDNKREQ RTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSNDKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEALT YYLNRIHQQSNKNKPIKQVILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKYGGTSIS DYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKIIATRNSHYCPVCQK
Specific function: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyr
COG id: COG0266
COG function: function code L; Formamidopyrimidine-DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FPG-type zinc finger [H]
Homologues:
Organism=Escherichia coli, GI1790066, Length=293, Percent_Identity=35.4948805460751, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1786932, Length=302, Percent_Identity=22.8476821192053, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015886 - InterPro: IPR015887 - InterPro: IPR000191 - InterPro: IPR012319 - InterPro: IPR020629 - InterPro: IPR010979 - InterPro: IPR000214 - InterPro: IPR010663 [H]
Pfam domain/function: PF01149 Fapy_DNA_glyco; PF06831 H2TH; PF06827 zf-FPG_IleRS [H]
EC number: =3.2.2.23; =4.2.99.18 [H]
Molecular weight: Translated: 33412; Mature: 33281
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS01242 ZF_FPG_1 ; PS51066 ZF_FPG_2 ; PS51068 FPG_CAT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYT CCCCCCHHHHHCCCCCEEEHHHHHHHHHCCCEECCCCCCHHHHHHCCCCHHHHHHHCCCE ITNVERRSKYIVFQLDNKREQRTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSN EEEECCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCEEEEEEECC DKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEALTYYLNRIHQQSNKNKPIKQV CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHH ILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKYGGTSI HHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SDYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKIIATRNSHYCPVCQK CCHHCCCCCCCEEEEEEEHHHHHHHHHCCHHHHEEEEEECCCCCCCCCCC >Mature Secondary Structure PELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETIIKGIELDTFKTLSEGYT CCCCCHHHHHCCCCCEEEHHHHHHHHHCCCEECCCCCCHHHHHHCCCCHHHHHHHCCCE ITNVERRSKYIVFQLDNKREQRTLISHLGMAGGFFIVDELEDIMIPNYRKHWHVIFELSN EEEECCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCEEEEEEECC DKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEALTYYLNRIHQQSNKNKPIKQV CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHH ILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQEMVFYYVREVLEEGIKYGGTSI HHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SDYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKIIATRNSHYCPVCQK CCHHCCCCCCCEEEEEEEHHHHHHHHHCCHHHHEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA