Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is polA [H]
Identifier: 57650561
GI number: 57650561
Start: 1767789
End: 1770419
Strand: Reverse
Name: polA [H]
Synonym: SACOL1737
Alternate gene names: 57650561
Gene position: 1770419-1767789 (Counterclockwise)
Preceding gene: 57650562
Following gene: 57650560
Centisome position: 63.02
GC content: 32.23
Gene sequence:
>2631_bases GTGAATAAATTAGTATTAATCGATGGTAATAGCTTAAGTTTTAGAGCTTTTTATGCATTACCTTTGTTATCAAACAAAGC AGGCATTCATACCAATGCAGTATATGGTTTTGCAATGTTACTAGAGAAGATTTTAAAAGAAGAAAAGCCAAATCATTTTT TAGTAGCGTTTGATGCAGGTAAAACGACTTTCAGACATGAAAAATATAGTGAATATAAAGGTGGACGCCAGAAAACGCCG CCTGAACTAAGTGAGCAATTTCCTTATATTCGCCAATTATTAGATGCTTATCATATTAAACGTTATGAATTAGATAACTA TGAGGCAGATGATATTATCGGAACTTTAAGTAAAGAAGCAGATAAAGCGGGCTTTCAGACAATTATTATTACGGGAGACC GAGATTTAACACAACTTGCAACGGATAATGTAACCATTTATTACACTAAAAAAGGTGTTACTGATGTTGATCATTATACA CCTGACTTTATTGCGGAAAAATACAACGGGTTAACACCTAATCAAATTATTGATATGAAAGGATTAATGGGAGATACTTC TGATAATATACCAGGTGTTGCAGGTGTTGGAGAGAAAACAGCAATAAAATTGCTAAACCAATTTGACACAGTAGAAGGTG TCTATGAACATTTAGATGAAATTTCAGGTAAAAAGTTAAAAGAAAAACTTCAAAATAGCAAAGAAGATGCATTAATGAGT AAAGAATTAGCAACGATTAATGTAGATAGTCCGATTGAAGTAAAACTTGAAGATACGTTAATGACTCATCAAGATGAACA ACAAGAAAAAATCGAATTGTTTAAGAAGTTAGAATTCAAACAATTGTTGGCTGACATTGATCAATCAGCAAGCGTTGAAG ATGCAATAGAAAAGACATTTGAAATTGAAACGTCTTTTGATAATATTGATTTTACTTCATTGAAAGAAGCGGCCATCCAT TTCGAATTAGACGGTGGTAACTATTTGCGAAATAATATTTTAAAATTCTCTTTATTTACAGGTGAGAAACATATTGTAAT TAATGCGGATGACATAAATAATTATGTCGAACTAGTTTCATGGTTAGAAAATCCGAATTCGAAAAAAGTCGTATATGATG CTAAAAAAACATATGTAGCATCACATAGATTGGGGATTGATATTCAAAATATTTCTTTCGATATTATGTTGGCCAGTTAT ATAATTGATCCATCTCGTACGATTAGTGATGTTCAATCAGTTGTTTCATTGTACGGTCAAAGTTTTGTGAAAGACGATGT GAGTATATATGGAAAAGGTAAGAAATTTAAGGTACCTGAAGATGATGTTTTAAATCCATATGTTGCTTCTATTACTGATG CAATTTACTTTGCGAAACCAAATATGGATAAACAATTAGAAGAATACAATCAGGTAGAACTCTTGGCTGATTTAGAGCTA CCGCTAGCTAAGATTTTAAGTGAAATGGAAGAAATTGGTATATTTACAGATGTTCATGATTTAGAAGAAATGGAAAAAGA AATTCAAGAAAAATTAGACGTCTTGATTCGAAATATCCATGATGCAGCTGGTGAAGATTTTAATATAAATTCTCCTAAGC AATTAGGTGTTGTATTGTTTGAGACATTACAATTACCTGTTATTAAAAAGACGAAAACAGGATATTCTACTGCTGTAGAT GTCTTAGAGCAATTGCAAGGTGAACATCCTATCATTGATTATATTTTAGAATATCGTCAATTATCTAAGTTACAGTCTAC TTATGTTGAAGGATTGCAAAAGGTAATTAGTGATGATCAACGTATCCATACACGTTTTAATCAAACTTTAGCGCAAACTG GACGTTTATCAAGTGTAGATCCTAATTTACAAAATATTCCGGTTAGACTTGAAGAAGGGCGTAAAATAAGAAAAGCCTTT AAACCAACTTCAAAAGATAGCGTTATATTATCAGCAGATTATTCTCAAATTGAATTGCGTGTATTAGCACACATTACACA AGATGAGAGTATGAAAGAAGCATTTATCAACGGCGATGATATTCATACAGCAACTGCTATGAAAGTATTTGGTGTAGAAG CTGATCAAGTCGATAGTTTAATGCGTCGTCAAGCAAAAGCAGTTAACTTTGGAATTGTTTATGGGATAAGTGATTATGGT TTAAGTCAAAGTTTAGGTATTACTCGTAAAAAAGCAAAAGCATTCATTGATGATTATTTAGCTAGTTTCCCAGGTGTAAA ACAATATATGTCTGATATTGTAAAAGATGCCAAAGCTTTAGGTTACGTGGAAACATTGCTACATCGTCGACGCTATATTC CTGATATTACGAGTCGTAACTTTAATTTACGCGGCTTTGCTGAACGTACTGCTATGAATACGCCAATACAGGGCAGTGCT GCAGATATCATTAAACTGGCAATGGTTAAATTTGCTCAAAAAATGAAAGAGACAACATATCAAGCTAAACTATTATTACA AGTACACGATGAATTAATTTTTGAAGTACCTAAGTCAGAAGTAGATTCATTTAGTGAATTTGTAGAAGAGATAATGGAAA ATGCATTGCAATTAGATGTTCCATTAAAAGTAGACTCAAGTTATGGTGCAACCTGGTATGATGCAAAATAA
Upstream 100 bases:
>100_bases TTAGGTCGTGTATAAATACTCTATGAGATAGTTTCTTTAATTACGACATCACAGTCGAATATGCTAAAATATATATAAAT TAGTTCTGGAGGTTAAAATT
Downstream 100 bases:
>100_bases AGTGAGGTTAATGGTATGCCCGAATTACCAGAAGTAGAACATGTAAAAAGAGGAATTGAACCCTACGTTATAAATCAAAA AATTGAACACGTTATATTTT
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAFDAGKTTFRHEKYSEYKGGRQKTP PELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYT PDFIAEKYNGLTPNQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKEDALMS KELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEIETSFDNIDFTSLKEAAIH FELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVSWLENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASY IIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVELLADLEL PLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVD VLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYG LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK
Sequences:
>Translated_876_residues MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAFDAGKTTFRHEKYSEYKGGRQKTP PELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYT PDFIAEKYNGLTPNQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKEDALMS KELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEIETSFDNIDFTSLKEAAIH FELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVSWLENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASY IIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVELLADLEL PLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVD VLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYG LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK >Mature_876_residues MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAFDAGKTTFRHEKYSEYKGGRQKTP PELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYT PDFIAEKYNGLTPNQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKEDALMS KELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEIETSFDNIDFTSLKEAAIH FELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVSWLENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASY IIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVELLADLEL PLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVD VLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYG LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=515, Percent_Identity=32.0388349514563, Blast_Score=243, Evalue=7e-64, Organism=Homo sapiens, GI139394648, Length=630, Percent_Identity=26.8253968253968, Blast_Score=220, Evalue=5e-57, Organism=Escherichia coli, GI1790294, Length=925, Percent_Identity=38.4864864864865, Blast_Score=558, Evalue=1e-160, Organism=Escherichia coli, GI226510970, Length=221, Percent_Identity=31.2217194570136, Blast_Score=126, Evalue=5e-30, Organism=Caenorhabditis elegans, GI86563272, Length=378, Percent_Identity=32.2751322751323, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI17933644, Length=508, Percent_Identity=29.5275590551181, Blast_Score=224, Evalue=2e-58,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 99196; Mature: 99196
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAFDAG CCEEEEEECCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC KTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSKEA CCCHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH DKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQIIDMK HCCCCEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHEEEHH GLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKEDALMS HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH KELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTF HHHEEEECCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHE EIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS EEECCCCCCCHHHHCCEEEEEEECCCCHHHCCCEEEEEEECCEEEEEECCCHHHHHHHHH WLENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQ HHHCCCCCEEEEECHHHHHHHHHCCEEEECCCHHEEHHHHHCCCCHHHHHHHHHHHHHHH SFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVELLADLEL HHHCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHEEHHCCC PLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLF CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH ETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQ HHHCCCCEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH RIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELR HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEEEECCCHHHHHH VLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYG HHHHHHCCHHHHHHHCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRN CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSE CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK HHHHHHHHHHHHHHHHEECCCEEECCCCCCEECCCC >Mature Secondary Structure MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAFDAG CCEEEEEECCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC KTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSKEA CCCHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH DKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQIIDMK HCCCCEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHEEEHH GLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKEDALMS HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH KELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTF HHHEEEECCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHE EIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS EEECCCCCCCHHHHCCEEEEEEECCCCHHHCCCEEEEEEECCEEEEEECCCHHHHHHHHH WLENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQ HHHCCCCCEEEEECHHHHHHHHHCCEEEECCCHHEEHHHHHCCCCHHHHHHHHHHHHHHH SFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVELLADLEL HHHCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHEEHHCCC PLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLF CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH ETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQ HHHCCCCEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH RIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELR HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEEEECCCHHHHHH VLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYG HHHHHHCCHHHHHHHCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRN CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSE CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK HHHHHHHHHHHHHHHHEECCCEEECCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]