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The map label for this gene is xseB

Identifier: 57650479

GI number: 57650479

Start: 1603544

End: 1603774

Strand: Reverse

Name: xseB

Synonym: SACOL1567

Alternate gene names: 57650479

Gene position: 1603774-1603544 (Counterclockwise)

Preceding gene: 57650480

Following gene: 57650478

Centisome position: 57.09

GC content: 30.3

Gene sequence:

>231_bases
ATGACTAAAGAAACGCAAAGTTTTGAAGAAATGATGCAAGAATTAGAGCAAATTGTTCAAAAATTAGATAATGAAACAGT
ATCTTTAGAGGAATCATTAGATTTATATCAACGTGGTATGAAACTATCAGCAGCTTGTGACACAACTTTAAAAAATGCCG
AAAAAAAGGTGAATGACTTAATAAAAGAAGAAGCTGAGGATGTAAAAAATGACGAATCTACCGATGAATAA

Upstream 100 bases:

>100_bases
GTCATTACGAGTACTAAAGATTTAACAGAAAATGATCAATTGACGTTAACAATGAAAGATGGCTTAGTAGATGCAAAAGT
TACGAAAGTAAGGTGTAATA

Downstream 100 bases:

>100_bases
ATTAATAGATGAAGTCAATAATGAATTATCGGTTGCGATAAATAAATCAGTAATGGATACTCAGCTAGAAGAAAGTATGT
TGTATTCATTAAATGCTGGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MTKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAEDVKNDESTDE

Sequences:

>Translated_76_residues
MTKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAEDVKNDESTDE
>Mature_75_residues
TKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAEDVKNDESTDE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_STAA1 (A7X2P9)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442100.1
- ProteinModelPortal:   A7X2P9
- SMR:   A7X2P9
- STRING:   A7X2P9
- EnsemblBacteria:   EBSTAT00000003563
- GeneID:   5559029
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1510
- eggNOG:   COG1722
- GeneTree:   EBGT00050000024963
- HOGENOM:   HBG728416
- OMA:   CEELLRT
- ProtClustDB:   PRK14068
- BioCyc:   SAUR418127:SAHV_1510-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8760; Mature: 8629

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDL
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IKEEAEDVKNDESTDE
HHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IKEEAEDVKNDESTDE
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA