Click here to switch to the map view.

The map label for this gene is glnR [H]

Identifier: 57650299

GI number: 57650299

Start: 1346195

End: 1346563

Strand: Direct

Name: glnR [H]

Synonym: SACOL1328

Alternate gene names: 57650299

Gene position: 1346195-1346563 (Clockwise)

Preceding gene: 57650298

Following gene: 57650300

Centisome position: 47.92

GC content: 32.52

Gene sequence:

>369_bases
ATGATATCGAATGATGCAATCAGACGAAATATGGCTGTCTTCTCTATGAGTGTAGTAAGTAAGTTAACGGATTTAACGCC
AAGGCAAATACGTTACTATGAAACACATGAACTCATCAAACCTGAAAGAACAGAAGGTCAAAAACGTCTGTTCTCACTCA
ATGATTTGGAAAGATTACTAGAAATTAAATCATTATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTAT
GACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGG
AGAAACTTTGCCAATAAATCGTGGTGATTTATCCCGATTTATTAAATAA

Upstream 100 bases:

>100_bases
CAATGTTTTAAGCTTTATGTTAGAAAACCTGACATATTTTTGAAATCCTAAAAAAATTATGATAAGTTATTAACAAGTTC
AAAAGTAGAGGAGAGGAACA

Downstream 100 bases:

>100_bases
AATTTGGAGGATTTTAAAATGCCAAAACGTACTTTCACTAAAGACGACATTCGTAAATTTGCAGAAGAGGAAAATGTAAG
ATATTTAAGATTACAATTCA

Product: glutamine synthetase repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MISNDAIRRNMAVFSMSVVSKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLLEIKSLLEKGFNIKGIKQIIY
DSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRFIK

Sequences:

>Translated_122_residues
MISNDAIRRNMAVFSMSVVSKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLLEIKSLLEKGFNIKGIKQIIY
DSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRFIK
>Mature_122_residues
MISNDAIRRNMAVFSMSVVSKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLLEIKSLLEKGFNIKGIKQIIY
DSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRFIK

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 14277; Mature: 14277

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNDAIRRNMAVFSMSVVSKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLL
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHH
EIKSLLEKGFNIKGIKQIIYDSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRF
HHHHHHHCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
IK
CC
>Mature Secondary Structure
MISNDAIRRNMAVFSMSVVSKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLL
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHH
EIKSLLEKGFNIKGIKQIIYDSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRF
HHHHHHHCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]