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The map label for this gene is ycdM [C]

Identifier: 41410285

GI number: 41410285

Start: 4656212

End: 4657138

Strand: Reverse

Name: ycdM [C]

Synonym: MAP4187c

Alternate gene names: 41410285

Gene position: 4657138-4656212 (Counterclockwise)

Preceding gene: 41410287

Following gene: 41410270

Centisome position: 96.43

GC content: 71.2

Gene sequence:

>927_bases
GTGAGGTTTTCCATCGCCATCCCCCAGTTCGACTACGACGGCTTCGACGGGGCGGGGCTGCGTTCCTTTTTGACGCGCGC
CGAGCAGCTCGGGTTCGAGGGCGGCTGGGCGCTCGAGCAGATCATCGGTCCGGCGCCGCTGCTGGCGCCGCTGGAGCTGC
TCGCCTACTGCGCGGCCTGCACCGAGCGGCTGCGGCTGGGGGTCGCGGTGTTGGTGACGTCGCTGCACGATCCGCTGCAG
CTGGCCTCGGCGGTCACCGCCGTGGACCGACTCAGCCACGGCCGGTTGGACATTGGCGTCGCACCCGGCGGCGGCACCCG
CAAGTTCGCCGCCTTCGGAGTCGACAAGGACACCTTCGTCGCGTATTTCACCGAGGGCCTGAAGCTGATGAAGGCGGCCT
GGTCCGACGACCCGCGGGTGACGTTTCACGGGCGGTTCCGCGACGTCGACGACCTGCCGATCGCGCCCAAGCCCTTGCAG
CGCCCGCACCCGCCGATCTGGTTCGGCGGGCTGGCGCCGAAGGCGCTGGCCCGCGCGGTCCGGCACGGCGACGCGTTCAT
GGGCGCGGGCTCGTCGACCACCGAGGCGTTCGCCGGGGCAGTGGCCGTGCTGCGCCGCGAACTCGACGAACAGCAAAGGG
ACCCGGCCGAATTCACGATCGGCAAAAGGGTTTACCTGACGGTCGACGACGACGCGGCGCGGGCCCGCGAGCGGGTGCTG
GCCGGGCTGGGCCGCATCTACGGGCGGATGCCCGGCGTGGCCGACGTGCCGGTGTCCGGCACGCCCGGGGACGTGGTCCG
GGGGCTGCGCGAGGTCATCGACGCCGGGGCGCAGACGCTGCTACTGAACCCCGTCGGCGCCGATGTCGCGGAGAACCACG
AGCAGATGGAACGCCTTGCCGCGGAAGTGATTCCGCAGCTGAATTAG

Upstream 100 bases:

>100_bases
AGGGCACGGATCTCGTCGGCGCCTTTGGACAGGCCGGGTATCGAGGACAGCACAGCGAACATGTCTGCAGACTACCGACG
AACGGCCGTACGGTGGTCGG

Downstream 100 bases:

>100_bases
CCGCGCGGGCCGACTACAGCTCGGTGACCGAGCCGCCCGCGGCGGTGATCTTCTCGCGTGCGCTGCCGCTGAACTTGTGC
GCGGACACCTCGACCTTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRFSIAIPQFDYDGFDGAGLRSFLTRAEQLGFEGGWALEQIIGPAPLLAPLELLAYCAACTERLRLGVAVLVTSLHDPLQ
LASAVTAVDRLSHGRLDIGVAPGGGTRKFAAFGVDKDTFVAYFTEGLKLMKAAWSDDPRVTFHGRFRDVDDLPIAPKPLQ
RPHPPIWFGGLAPKALARAVRHGDAFMGAGSSTTEAFAGAVAVLRRELDEQQRDPAEFTIGKRVYLTVDDDAARARERVL
AGLGRIYGRMPGVADVPVSGTPGDVVRGLREVIDAGAQTLLLNPVGADVAENHEQMERLAAEVIPQLN

Sequences:

>Translated_308_residues
MRFSIAIPQFDYDGFDGAGLRSFLTRAEQLGFEGGWALEQIIGPAPLLAPLELLAYCAACTERLRLGVAVLVTSLHDPLQ
LASAVTAVDRLSHGRLDIGVAPGGGTRKFAAFGVDKDTFVAYFTEGLKLMKAAWSDDPRVTFHGRFRDVDDLPIAPKPLQ
RPHPPIWFGGLAPKALARAVRHGDAFMGAGSSTTEAFAGAVAVLRRELDEQQRDPAEFTIGKRVYLTVDDDAARARERVL
AGLGRIYGRMPGVADVPVSGTPGDVVRGLREVIDAGAQTLLLNPVGADVAENHEQMERLAAEVIPQLN
>Mature_308_residues
MRFSIAIPQFDYDGFDGAGLRSFLTRAEQLGFEGGWALEQIIGPAPLLAPLELLAYCAACTERLRLGVAVLVTSLHDPLQ
LASAVTAVDRLSHGRLDIGVAPGGGTRKFAAFGVDKDTFVAYFTEGLKLMKAAWSDDPRVTFHGRFRDVDDLPIAPKPLQ
RPHPPIWFGGLAPKALARAVRHGDAFMGAGSSTTEAFAGAVAVLRRELDEQQRDPAEFTIGKRVYLTVDDDAARARERVL
AGLGRIYGRMPGVADVPVSGTPGDVVRGLREVIDAGAQTLLLNPVGADVAENHEQMERLAAEVIPQLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial luciferase oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33103; Mature: 33103

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSIAIPQFDYDGFDGAGLRSFLTRAEQLGFEGGWALEQIIGPAPLLAPLELLAYCAAC
CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH
TERLRLGVAVLVTSLHDPLQLASAVTAVDRLSHGRLDIGVAPGGGTRKFAAFGVDKDTFV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHH
AYFTEGLKLMKAAWSDDPRVTFHGRFRDVDDLPIAPKPLQRPHPPIWFGGLAPKALARAV
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
RHGDAFMGAGSSTTEAFAGAVAVLRRELDEQQRDPAEFTIGKRVYLTVDDDAARARERVL
HHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCHHHHHHHHHH
AGLGRIYGRMPGVADVPVSGTPGDVVRGLREVIDAGAQTLLLNPVGADVAENHEQMERLA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
AEVIPQLN
HHHCCCCC
>Mature Secondary Structure
MRFSIAIPQFDYDGFDGAGLRSFLTRAEQLGFEGGWALEQIIGPAPLLAPLELLAYCAAC
CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH
TERLRLGVAVLVTSLHDPLQLASAVTAVDRLSHGRLDIGVAPGGGTRKFAAFGVDKDTFV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHH
AYFTEGLKLMKAAWSDDPRVTFHGRFRDVDDLPIAPKPLQRPHPPIWFGGLAPKALARAV
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
RHGDAFMGAGSSTTEAFAGAVAVLRRELDEQQRDPAEFTIGKRVYLTVDDDAARARERVL
HHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCHHHHHHHHHH
AGLGRIYGRMPGVADVPVSGTPGDVVRGLREVIDAGAQTLLLNPVGADVAENHEQMERLA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
AEVIPQLN
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]