Click here to switch to the map view.

The map label for this gene is ydjX [C]

Identifier: 41410188

GI number: 41410188

Start: 4561226

End: 4561927

Strand: Reverse

Name: ydjX [C]

Synonym: MAP4090c

Alternate gene names: 41410188

Gene position: 4561927-4561226 (Counterclockwise)

Preceding gene: 41410189

Following gene: 41410178

Centisome position: 94.45

GC content: 73.93

Gene sequence:

>702_bases
ATGGACGACCAGGAAGCTCCCGACGCCCCGGCATCGCGGCGGGCTCACATCCTGCGCCTCGCCGTGTTCGCCGGCTTTCT
GGCCGTCGTGTTCTATCTGGTGGCAGTGGCGCGGGTGATCGACGTCGGCGCGATCCGGGCCGTGGTGTCGGCCACCGGCC
CGGCCGCGCCGCTGACCTACGTGGTGGCCTCGGCGCTCGCCGGCGCGTTGTTCGTGCCGGGCTCGATACTGGCCGCCGGC
AGTGGGCTGCTGTTCGGTCCGCTGCTGGGCGTCTTCGTGACGCTGGGCGCGACGGTGGGCACCGCGACCACCGCGAGTTT
CGTCGGCCGGCGGGCCGGCCGCGACAGCGCCCGGGCGCTGCTGGGCCCGGCGCGGGCCGACCGCGTCGACGCCCTGATCG
GGCGCGGCGGCCTGTGGGCGGTCGTCGGGCAGCGCTTCGTCCCCGGCATCTCGGATGCGCTGGCCTCCTACGCCTTCGGG
GCGTTCGGAGTTCCGTTGTGGCAGATGGCCGTTGGCGCGTTCATCGGTTCGGCCCCGCGCGCCTTCGCCTACACCGCGCT
GGGTGCCTCGATCGGGAATCGGTCCTCGCTGCTGGCTTATGCCGCGGTCGCGGTGTGGTGCGTGAGCGCGATCGTCGGCG
CGTTCGCCGCGCATCGCGGCTACCGACACTGGCGCGGCCGGCCCAAGGACGAGGCGCGCTAA

Upstream 100 bases:

>100_bases
TGGTGGGGCCCGAGGCGTCGGTGCGGGCCGCGATCGAGCGCCGGGCGATCCGGGCCACCGGACTGCGGCAGCGGCTGCGG
GCGGTCGGGTGACGGCCGGT

Downstream 100 bases:

>100_bases
TCGACCGCCGTTGTCAGCGGGCCTGTCCCAGCATCGTCTTCCACCCCTCGTCGCCGATGGTGGCCGAATTGGCCACCGAA
TACACCACCCCGTCGGGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTYVVASALAGALFVPGSILAAG
SGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARALLGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFG
AFGVPLWQMAVGAFIGSAPRAFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDEAR

Sequences:

>Translated_233_residues
MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTYVVASALAGALFVPGSILAAG
SGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARALLGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFG
AFGVPLWQMAVGAFIGSAPRAFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDEAR
>Mature_233_residues
MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTYVVASALAGALFVPGSILAAG
SGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARALLGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFG
AFGVPLWQMAVGAFIGSAPRAFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDEAR

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=204, Percent_Identity=22.5490196078431, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23810; Mature: 23810

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARAL
HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPR
HCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCH
AFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDEAR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
>Mature Secondary Structure
MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARAL
HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPR
HCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCH
AFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDEAR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]