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The map label for this gene is recD

Identifier: 41410189

GI number: 41410189

Start: 4561936

End: 4563660

Strand: Reverse

Name: recD

Synonym: MAP4091c

Alternate gene names: 41410189

Gene position: 4563660-4561936 (Counterclockwise)

Preceding gene: 41410190

Following gene: 41410188

Centisome position: 94.49

GC content: 73.97

Gene sequence:

>1725_bases
GTGACGGCGGACGTGTTGCCGGAGCGGGTGTTTGACGCCGGGCCGCTGCGCCCGTTCGCCGACGCCGGCATCTTCGAAGC
AGCGGATGTCCGTGTGGCGCAACGGCTTACCGCGCTCACCGGCGAGTCCGATGATCGGGTGGCGCTGGCCGTCGCCCTGC
TGGTGCGCGCGCTGCGGGGCGGTTCGGTGTGCGTCGATCTGCGGGCGGTGCCGGCACAGGTCGGCGCGGCGGACCTGCCC
TGGCCCGCCGCCGGCGACTGGCTGGCCGCGGTGCGGGCCAGCCCGCTGCTCGGGCCGCCGCCGGTGCTGCGGTTCTTCGG
CGATCTGCTCTACTTCGACCGGTACTGGCTGGAGGAAGAGCAGGTGTGCACCGATCTGCTGGCACTGTCGGCACCGGCGG
GCGATGTCGAATCCTCATGCTACGAAAGGCTTTTCCCGCCCGGCTACGAAGAACAGCGGGCGGCCGCCCGGATCGCGGTG
TCCCAGGCGCTCACCGTGCTGACCGGCGGGCCGGGCACCGGCAAGACCACCACGGTCGCGCGGCTGCTCGCCCTGCTGGT
CGAGCAGGCCGAGCGCGCCGGTGAGCCGCGGCCGAGGATCGCGCTGGCCGCCCCGACCGGCAAGGCGGCCGCGCGGCTGG
CCGAGGCGGTGGCCGCCGAGATCGAGCACCTCGACCCGGCCGACCGGGCGCGGCTGGCCGGGCTGACCGGCACCACGCTG
CACCGGCTGCTGGGGCCGCGCCCCGATACGTCGGTGCGGTTCAAGCACAACCGCGGCAACCGGCTGCCGCACGACATCAT
CGTGGTCGACGAGACGTCGATGGTGTCGTTGACCATGATGGCCCGGCTGGCCGAAGCCGTCCGGCCGGACACCCGGCTGA
TCCTGGTCGGCGATCCCGACCAGTTGGCCTCGGTGGAGGCGGGCGCCGTGCTGGCCGATCTGGTCGACGGGCTGGCCGGC
CGCGCCGGGGTGCGGGTCGCCGCGCTGGCCACCCCGCACCGGTTCGGCAGCGCGATCGGCGCGCTGGCCGCGGCGATCCG
GGCCGGCGACGCCGACCGGGTGCTGGAGTTGTTGGCGGCCGGCGGTGAGCACATCGAGTGGGTGGATTCCGAGCGCCCGG
CCGACCGGCTGCGCGAGGTGCTGGTGTCGCATGCGCTGCGGTTGCGCTCGGCGGCGCTGCTGGGCGCGGCTCAGGCCGCG
CTGGCCACGCTGGACGAGCACCGGCTGCTGTGTGCGCACCGCGACGGGCCGCACGGGGCGGTGCGGTGGAACACGTTGGT
GCACAACTGGATTGCCGAAGAAACCGGTCAGCCGGCCTGGTCGCAATGGTATGCCGGGCGTCCGCTGCTGGTGACGGCGA
ACGACTACGGGCTGCGTCTGTACAACGGCGACACCGGCGTGACGGTGGCCGGTGCGGACGGGCTGCGGGCCGTCATCGCC
GGTGCGGCCGGCCCGCTGGACTTCGCCACCAGCCGGCTGGGCGAGGTGGAGACGATGCACGCCATGACCATCCACAAGAG
TCAGGGCAGCCAGGCCGACGAGGTGACGGTGCTGATACCGCCGGAGGATTCGCGGCTGCTGACCCGGGAACTGTTCTACA
CCGCGGTGACCCGGGCCAAGAGCAGGGTGCGGGTGGTGGGGCCCGAGGCGTCGGTGCGGGCCGCGATCGAGCGCCGGGCG
ATCCGGGCCACCGGACTGCGGCAGCGGCTGCGGGCGGTCGGGTGA

Upstream 100 bases:

>100_bases
CGGTGCGCGACGGTCACCCGTCGGGCGTCTTCGATTGGCGACCGCCGTCGTCGTTGATCACGGCGCTGTCCGACCTGCTG
GATGCCCAGGGGGTGGCGGT

Downstream 100 bases:

>100_bases
CGGCCGGTATGGACGACCAGGAAGCTCCCGACGCCCCGGCATCGCGGCGGGCTCACATCCTGCGCCTCGCCGTGTTCGCC
GGCTTTCTGGCCGTCGTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MTADVLPERVFDAGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPAQVGAADLP
WPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEEQVCTDLLALSAPAGDVESSCYERLFPPGYEEQRAAARIAV
SQALTVLTGGPGTGKTTTVARLLALLVEQAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTL
HRLLGPRPDTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVLADLVDGLAG
RAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWVDSERPADRLREVLVSHALRLRSAALLGAAQAA
LATLDEHRLLCAHRDGPHGAVRWNTLVHNWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIA
GAAGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEASVRAAIERRA
IRATGLRQRLRAVG

Sequences:

>Translated_574_residues
MTADVLPERVFDAGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPAQVGAADLP
WPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEEQVCTDLLALSAPAGDVESSCYERLFPPGYEEQRAAARIAV
SQALTVLTGGPGTGKTTTVARLLALLVEQAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTL
HRLLGPRPDTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVLADLVDGLAG
RAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWVDSERPADRLREVLVSHALRLRSAALLGAAQAA
LATLDEHRLLCAHRDGPHGAVRWNTLVHNWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIA
GAAGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEASVRAAIERRA
IRATGLRQRLRAVG
>Mature_573_residues
TADVLPERVFDAGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPAQVGAADLPW
PAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEEQVCTDLLALSAPAGDVESSCYERLFPPGYEEQRAAARIAVS
QALTVLTGGPGTGKTTTVARLLALLVEQAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLH
RLLGPRPDTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVLADLVDGLAGR
AGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWVDSERPADRLREVLVSHALRLRSAALLGAAQAAL
ATLDEHRLLCAHRDGPHGAVRWNTLVHNWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAG
AAGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEASVRAAIERRAI
RATGLRQRLRAVG

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=578, Percent_Identity=35.9861591695502, Blast_Score=240, Evalue=1e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 61046; Mature: 60915

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADVLPERVFDAGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRG
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
GSVCVDLRAVPAQVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEE
CCEEEEEEECCHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHH
QVCTDLLALSAPAGDVESSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVA
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
RLLALLVEQAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTL
HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHH
HRLLGPRPDTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPD
HHHHCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
QLASVEAGAVLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAA
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GGEHIEWVDSERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGA
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
VRWNTLVHNWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIA
EEHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCEEEEEECCCCEEEECCCCHHHHHH
GAAGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAK
CCCCCHHHHHHHHCCHHHHHEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
SRVRVVGPEASVRAAIERRAIRATGLRQRLRAVG
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TADVLPERVFDAGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRG
CCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
GSVCVDLRAVPAQVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEE
CCEEEEEEECCHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHH
QVCTDLLALSAPAGDVESSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVA
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
RLLALLVEQAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTL
HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHH
HRLLGPRPDTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPD
HHHHCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
QLASVEAGAVLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAA
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GGEHIEWVDSERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGA
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
VRWNTLVHNWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIA
EEHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCEEEEEECCCCEEEECCCCHHHHHH
GAAGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAK
CCCCCHHHHHHHHCCHHHHHEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
SRVRVVGPEASVRAAIERRAIRATGLRQRLRAVG
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]