Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41410131
Identifier: 41410131
GI number: 41410131
Start: 4493028
End: 4494755
Strand: Reverse
Name: 41410131
Synonym: MAP4033c
Alternate gene names: NA
Gene position: 4494755-4493028 (Counterclockwise)
Preceding gene: 41410135
Following gene: 41410127
Centisome position: 93.06
GC content: 75.12
Gene sequence:
>1728_bases ATGGTGAGCCAGAGCAGCGACGACACCCCGACCGGCCCCATCGCCGGCCAGCCCCGGCAACCGGCGGCGCGCCGCATCAT CCGGTCGCACGCCACCGGCGCCACGCCGCCGCCCGGCCCGGCGACCACCGGCCGGCGCGTCGCCGCCGACCTGACCGCGG TGGCGCTGCTGCTCGCCGCGGTGTTGCTGCCGTGGAACCTCTACTTCGGCGTCGGCATCCCGGACAGCAACCCGATCGTG TTCACGGTCCTGGTCGCGGTGACGGCGCTGGCGCTGGCCGCGCTCGCGGTGGCCGGTTCCTGGCGGGCGGGCGGCGCCCG GTTCGACCCGGCCCGGGCGGCCCGGCTTCGGTTGGCGCTCAACGTCCCCTACCTGCTTTTGGTGCTCGCCTTCGTCGGGT TCGACGCCGTCCAGACGGTCCGTTTCGGCGGCACGGTCGACGTGCCGGGCGGGGTGGGGCCGGGCGCCTGGGTGGGCATC GCCGGCGCGCTGCTGAGCGCCCAGGCGGTGCCGGCCGGCACGGCGGCCGCGCCGGTGCCGGGCACCCCGGGCGGCGACGA GGCCACCGGTTGGCATCGGGCCGCGCGGATCATCGGCGCGCTGTCGATGCTCGCGGCGGTGCTCAGCTTCGGTTTCAACC TGTACTGGCGGGTGCGCTACGCGCTGCAGAGTTCCGGCGGCGCAGCGCAATTCGGCAAGGAGAACATCGCGGTCATCGCG ACCGCGGTGGTGTACGGCGTGGTGGCGCTGGTCGCGGTGCTGGTCGCCTCCCGGTGGCTGCTGCGCTCCGACCGGGCGAG CCGGCTGACGACGATCGCGCTGGGCACGTCCACGCTGGGCGCCGGAATCCTGGTGTGGCTGTTGCCCGCCGGGCGGGACC TCGACGCCTTCCACGGCATCGCGCAGAACACCTCGACGGCCGGGGTGGGCTTCGAGGGCTACCTGGCCTGGGCCGCCGGC GCGGCGCTGTTCGCCCCCCGCAGCCTGTTCGAACGCCGAACCCCTTCGCACACCGAGGAATCCGCGTGGCGGGCCACGGC CCGCAGCGGCCTGCTGCTGATCGCGGTGTGGGCGTTGGGGTCGATGGCGATGCGGATCACCGACCTGGCCGTCGCGGTGA CGCTGAACTATCCGTTCTCCCGGTACGACAGCCTGGTGCTGGCCGCCTTCGACTTGGTGACCGCGGTGCTGGCGATCTGG CTACGGCGCCGGCTGGCCAACCTGGCCGCGCGACTGGTCACCTCGCTGTGCGGGCTGGTCGCCGCGCTCGCCGTCGCCCG CGTGGTGGTCGGCGTGCAGCTGGCGCCGCGGTTCGCCGATACCCCCAATTCGCCTGTGCACCACCCGGTTTACGGCAACA ACCTGGCCCAGCAGATCACCAGCGTGTTCGACGTGACGCTGTGCGGGCTGGCCCTGGGCATTCTGGTGGCCGCCGTGGTG GCCGGGCAGCTGGGCCGTCGGCGCCGGGCCCGTCGCTCCGCCCGCCGGCGCGCGGCGCAGGCGAACGCGGCGGCGCCGAC GACGCGTATCCCGGTGAGCCAGGGCGCCGCGCCGTCGGCCGCGGCGACCACCCGGATCGCCACCGGCGGCCCCGGCGCGG ACCACGAGCCGCCCACCACCGAGATCCCCCCGCTCGCCGGGTCGCCCCGGATCTTCCGCGGCGACGACTCCGGGACGCGG CAGATCCCGGTGCCCAAGCCCCAGATCTACAGGCCGCCGCAGCAGTAG
Upstream 100 bases:
>100_bases ATATGTTCGCAAGCGAGCAGTGCACGGGGTTCGGCCGGGTACTTTCGGACCGAACACCCGAAACCGCGCCGACAGCAGTC GTCCTTGAATTCCGGGGGGC
Downstream 100 bases:
>100_bases CCGTCACCGCAGCGGCGCGAACGCGAATTCGCGCAGCCCGTCGCCGGGTTGGACGGCGGCGCGAAACCCCAGCAGCCGCG CGGCCCGCGACGGGTCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MVSQSSDDTPTGPIAGQPRQPAARRIIRSHATGATPPPGPATTGRRVAADLTAVALLLAAVLLPWNLYFGVGIPDSNPIV FTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVPYLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGI AGALLSAQAVPAGTAAAPVPGTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIA TAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGIAQNTSTAGVGFEGYLAWAAG AALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALGSMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIW LRRRLANLAARLVTSLCGLVAALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVV AGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTTEIPPLAGSPRIFRGDDSGTR QIPVPKPQIYRPPQQ
Sequences:
>Translated_575_residues MVSQSSDDTPTGPIAGQPRQPAARRIIRSHATGATPPPGPATTGRRVAADLTAVALLLAAVLLPWNLYFGVGIPDSNPIV FTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVPYLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGI AGALLSAQAVPAGTAAAPVPGTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIA TAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGIAQNTSTAGVGFEGYLAWAAG AALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALGSMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIW LRRRLANLAARLVTSLCGLVAALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVV AGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTTEIPPLAGSPRIFRGDDSGTR QIPVPKPQIYRPPQQ >Mature_575_residues MVSQSSDDTPTGPIAGQPRQPAARRIIRSHATGATPPPGPATTGRRVAADLTAVALLLAAVLLPWNLYFGVGIPDSNPIV FTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVPYLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGI AGALLSAQAVPAGTAAAPVPGTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIA TAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGIAQNTSTAGVGFEGYLAWAAG AALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALGSMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIW LRRRLANLAARLVTSLCGLVAALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVV AGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTTEIPPLAGSPRIFRGDDSGTR QIPVPKPQIYRPPQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59550; Mature: 59550
Theoretical pI: Translated: 11.87; Mature: 11.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSQSSDDTPTGPIAGQPRQPAARRIIRSHATGATPPPGPATTGRRVAADLTAVALLLAA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VLLPWNLYFGVGIPDSNPIVFTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLAL HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEE NVPYLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGIAGALLSAQAVPAGTAAAPVP CCHHHHHHHHHHCHHHHHHEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC GTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCHHCCCCCHHHHH TAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGI HHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHHHHHHHEEECCCCCHHHHHHH AQNTSTAGVGFEGYLAWAAGAALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALG HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHH SMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIWLRRRLANLAARLVTSLCGLV HHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCEEECCCCCCCCCCCCC EIPPLAGSPRIFRGDDSGTRQIPVPKPQIYRPPQQ CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVSQSSDDTPTGPIAGQPRQPAARRIIRSHATGATPPPGPATTGRRVAADLTAVALLLAA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VLLPWNLYFGVGIPDSNPIVFTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLAL HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEE NVPYLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGIAGALLSAQAVPAGTAAAPVP CCHHHHHHHHHHCHHHHHHEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC GTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCHHCCCCCHHHHH TAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGI HHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHHHHHHHEEECCCCCHHHHHHH AQNTSTAGVGFEGYLAWAAGAALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALG HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHH SMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIWLRRRLANLAARLVTSLCGLV HHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCEEECCCCCCCCCCCCC EIPPLAGSPRIFRGDDSGTRQIPVPKPQIYRPPQQ CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA