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The map label for this gene is 41409974

Identifier: 41409974

GI number: 41409974

Start: 4338304

End: 4338966

Strand: Reverse

Name: 41409974

Synonym: MAP3876c

Alternate gene names: NA

Gene position: 4338966-4338304 (Counterclockwise)

Preceding gene: 41409975

Following gene: 41409973

Centisome position: 89.84

GC content: 67.72

Gene sequence:

>663_bases
ATGGCCGTCGACTACAGCGAACTGCCCGCCGAGGAGGCCGTGCGCGCCGCACGGGCCGGCGCGCGGCGCCGCCAGGTGCT
CGACGCCGCGGTCAAGGTGATGGGCCGCAACGGTTTTCACCGCATGTCCATGCACGACCTGGCCGCCGAGGCCGACGTCA
GCGTCGGCCTGCTGTACAAGTACTTCGGCGGCAAACAGGACCTGCTGCTGGCCACCATCGTGCGCATCCTCGACGTGTTC
CGCGATCAACTGGCACCGGTCATCGACGGCGCCGGCGACGACGTCGTCGACCAGTTGAGCGCGGGGATCCGCCGCTACAT
CCAGATCGTCGACGAGAACCTCGACGGGGTGGTGCTGACCTATCGGGAGAGCCGGACCCTCGGGGCGGCCGGCCGCGCCC
AGATCAAGGATCTGGAAATCGCCACCGCCGCGCCGCTGCGCGCGGTGATCGAAACCGGCATCGCCCAAGGCGTCTTCCGC
AGCGTCGACGTCGACCTTGCCGTGTTCGACATCATGCTGCTCGCCCACGGCTGGGCGCTCAAGCATTGGCACTTCGGGCC
GATCTACACCCTCGACGAGTACTTCGCGTTGCAGACCCGGCACCTGCTCAACGGGCTGATTTCCGATGAGCGCCGCGCCG
ACTACGCGGACGTGCTGAAATAG

Upstream 100 bases:

>100_bases
GTGGCGCGGGCGTTCGTCGACGCCCGCATCCAGACCATCTACGGCGGCACCAACGAGATCATGAAGACCATCATCGCCAA
GGACCTGGGCCTCTAGCGGC

Downstream 100 bases:

>100_bases
GGGCATGAGTGCCACGGCCCGCCGGATCGGCGCCCTGACTGCGCTGGCGACCCTGTGCGCCGGCACGGCGCCGGCGGCCG
CCGACCCGCCCCCGGGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator; Transcription Regulator; HTH-Type Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAVDYSELPAEEAVRAARAGARRRQVLDAAVKVMGRNGFHRMSMHDLAAEADVSVGLLYKYFGGKQDLLLATIVRILDVF
RDQLAPVIDGAGDDVVDQLSAGIRRYIQIVDENLDGVVLTYRESRTLGAAGRAQIKDLEIATAAPLRAVIETGIAQGVFR
SVDVDLAVFDIMLLAHGWALKHWHFGPIYTLDEYFALQTRHLLNGLISDERRADYADVLK

Sequences:

>Translated_220_residues
MAVDYSELPAEEAVRAARAGARRRQVLDAAVKVMGRNGFHRMSMHDLAAEADVSVGLLYKYFGGKQDLLLATIVRILDVF
RDQLAPVIDGAGDDVVDQLSAGIRRYIQIVDENLDGVVLTYRESRTLGAAGRAQIKDLEIATAAPLRAVIETGIAQGVFR
SVDVDLAVFDIMLLAHGWALKHWHFGPIYTLDEYFALQTRHLLNGLISDERRADYADVLK
>Mature_219_residues
AVDYSELPAEEAVRAARAGARRRQVLDAAVKVMGRNGFHRMSMHDLAAEADVSVGLLYKYFGGKQDLLLATIVRILDVFR
DQLAPVIDGAGDDVVDQLSAGIRRYIQIVDENLDGVVLTYRESRTLGAAGRAQIKDLEIATAAPLRAVIETGIAQGVFRS
VDVDLAVFDIMLLAHGWALKHWHFGPIYTLDEYFALQTRHLLNGLISDERRADYADVLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24320; Mature: 24189

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDYSELPAEEAVRAARAGARRRQVLDAAVKVMGRNGFHRMSMHDLAAEADVSVGLLYK
CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
YFGGKQDLLLATIVRILDVFRDQLAPVIDGAGDDVVDQLSAGIRRYIQIVDENLDGVVLT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
YRESRTLGAAGRAQIKDLEIATAAPLRAVIETGIAQGVFRSVDVDLAVFDIMLLAHGWAL
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH
KHWHFGPIYTLDEYFALQTRHLLNGLISDERRADYADVLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCC
>Mature Secondary Structure 
AVDYSELPAEEAVRAARAGARRRQVLDAAVKVMGRNGFHRMSMHDLAAEADVSVGLLYK
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
YFGGKQDLLLATIVRILDVFRDQLAPVIDGAGDDVVDQLSAGIRRYIQIVDENLDGVVLT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
YRESRTLGAAGRAQIKDLEIATAAPLRAVIETGIAQGVFRSVDVDLAVFDIMLLAHGWAL
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH
KHWHFGPIYTLDEYFALQTRHLLNGLISDERRADYADVLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA